RNA id: TU1061931


Basic Information

Item Value
RNA id TU1061931
length 240
lncRNA type intronic
GC content 0.31
exon number 2
gene id G931869
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86098706 ~ 86111379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttattgtgatggtgtaggtagactatattacatggatttattgtgatggtgtagggagactattacatggatttattgtgatggtgtagactatattacatggatttattgtgatggtgtagactatattacatgtatttattgtgatggtgtagactatattacatggatttattgtgatggtgtaggctatattacatggatttattgtgatggtgtagactatattacatggatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061747 lncRNA upstream 12535 86085164 ~ 86086171 (+) True G931749
TU1061877 lncRNA upstream 13699 86083389 ~ 86085007 (+) True G931837
TU1061874 lncRNA upstream 18483 86079143 ~ 86080223 (+) True G931835
TU1061872 lncRNA upstream 68371 86025232 ~ 86030335 (+) True G931834
TU1061894 lncRNA upstream 75438 86021721 ~ 86023268 (+) True G931847
TU1061926 lncRNA downstream 397 86103867 ~ 86111379 (+) False G931869
TU1061927 lncRNA downstream 397 86103867 ~ 86111379 (+) True G931869
TU1062101 lncRNA downstream 11839 86115309 ~ 86115551 (+) True G931996
TU1062138 lncRNA downstream 26129 86129599 ~ 86131642 (+) True G932017
TU1062139 lncRNA downstream 26986 86130456 ~ 86131758 (+) True G932018
XM_036934356.1 mRNA upstream 81131 86008932 ~ 86017575 (+) False LOC110528614
XM_036989418.1 mRNA upstream 89906 85994536 ~ 86008800 (+) True LOC118966669
XM_036934355.1 mRNA upstream 141614 85951030 ~ 85957092 (+) False LOC110528615
XM_036934338.1 mRNA upstream 153525 85929157 ~ 85945181 (+) False LOC110516966
XM_036934361.1 mRNA downstream 48533 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 97574 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 97636 86201106 ~ 86209191 (+) False LOC110513338
XM_036934367.1 mRNA downstream 127310 86230780 ~ 86285648 (+) True LOC110514691
XR_005034311.1 mRNA downstream 153787 86257257 ~ 86258472 (+) False LOC118936862
TU1061780 other upstream 86165 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 146033 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 196094 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 203969 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 312208 85785500 ~ 85786498 (+) True G931776
TU1062162 other downstream 97728 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 339580 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 620467 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 894316 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 1015612 87119082 ~ 87126721 (+) True LOC110516832

Expression Profile