RNA id: TU1062101


Basic Information

Item Value
RNA id TU1062101
length 243
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G931996
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86115309 ~ 86115551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaaagtgctgtacagaaacccagcctaaaatccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctctgaggggtgggccagtcctcttctggctgtgcctggtggagattagaaacctagagaggaaccaggctctgagaggtgggccagtcctcttctggctgtgccgggtggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061925 lncRNA upstream 3930 86099496 ~ 86111379 (+) False G931869
TU1061929 lncRNA upstream 3930 86103205 ~ 86111379 (+) False G931869
TU1061930 lncRNA upstream 3930 86103205 ~ 86111379 (+) False G931869
TU1061926 lncRNA upstream 3930 86103867 ~ 86111379 (+) False G931869
TU1061927 lncRNA upstream 3930 86103867 ~ 86111379 (+) True G931869
TU1062138 lncRNA downstream 14048 86129599 ~ 86131642 (+) True G932017
TU1062139 lncRNA downstream 14905 86130456 ~ 86131758 (+) True G932018
TU1062145 lncRNA downstream 27881 86143432 ~ 86144304 (+) True G932024
TU1062147 lncRNA downstream 36836 86152387 ~ 86152617 (+) True G932026
TU1062148 lncRNA downstream 37244 86152795 ~ 86153035 (+) True G932027
XM_036934356.1 mRNA upstream 97734 86008932 ~ 86017575 (+) False LOC110528614
XM_036989418.1 mRNA upstream 106509 85994536 ~ 86008800 (+) True LOC118966669
XM_036934355.1 mRNA upstream 158217 85951030 ~ 85957092 (+) False LOC110528615
XM_036934338.1 mRNA upstream 170128 85929157 ~ 85945181 (+) False LOC110516966
XM_036934361.1 mRNA downstream 36452 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 85493 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 85555 86201106 ~ 86209191 (+) False LOC110513338
XM_036934367.1 mRNA downstream 115229 86230780 ~ 86285648 (+) True LOC110514691
XR_005034311.1 mRNA downstream 141706 86257257 ~ 86258472 (+) False LOC118936862
TU1061780 other upstream 102768 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 162636 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 212697 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 220572 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 328811 85785500 ~ 85786498 (+) True G931776
TU1062162 other downstream 85647 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 327499 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 608386 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 882235 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 1003531 87119082 ~ 87126721 (+) True LOC110516832

Expression Profile