RNA id: TU1062195


Basic Information

Item Value
RNA id TU1062195
length 221
lncRNA type intronic
GC content 0.43
exon number 1
gene id G932065
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86339242 ~ 86339462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccactaattatcaaaatccagaaaagagacgttgaATTCTacgaagtgattcccaaaccttccataacaaaaccatcacctacagagagatgaacctggagaagagtcctctaagcaagctggtcctggggctctgttcacaaacacaaacacaccctacagagccccaggacagcagcacaattagacccaactaaatcataagaaaacaaaaagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062191 lncRNA upstream 2514 86334061 ~ 86336728 (+) False LOC118936864
TU1062192 lncRNA upstream 2514 86334061 ~ 86336728 (+) False LOC118936864
TU1062193 lncRNA upstream 2514 86334061 ~ 86336728 (+) False LOC118936864
TU1062194 lncRNA upstream 2514 86334061 ~ 86336728 (+) True LOC118936864
TU1062190 lncRNA upstream 5985 86332630 ~ 86333257 (+) True G932063
TU1062197 lncRNA downstream 3257 86342719 ~ 86342939 (+) True G932067
TU1062199 lncRNA downstream 5081 86344543 ~ 86344842 (+) True G932069
TU1062200 lncRNA downstream 6462 86345924 ~ 86346134 (+) True G932070
TU1062201 lncRNA downstream 8823 86348285 ~ 86349033 (+) False G932071
TU1062202 lncRNA downstream 8823 86348285 ~ 86349033 (+) True G932071
XR_005034313.1 mRNA upstream 2712 86334339 ~ 86336530 (+) False LOC118936864
XM_036934368.1 mRNA upstream 15412 86287581 ~ 86323830 (+) False LOC118936863
XM_036934369.1 mRNA upstream 15412 86287688 ~ 86323830 (+) True LOC118936863
XM_036934367.1 mRNA upstream 53594 86230780 ~ 86285648 (+) True LOC110514691
XM_036934375.1 mRNA downstream 29357 86368819 ~ 86395066 (+) False LOC110514239
XM_036934376.1 mRNA downstream 29406 86368868 ~ 86395065 (+) False LOC110514239
XM_036934374.1 mRNA downstream 29406 86368868 ~ 86395066 (+) False LOC110514239
XM_036934377.1 mRNA downstream 31433 86370895 ~ 86395066 (+) False LOC110514239
XR_005034314.1 mRNA downstream 55731 86395193 ~ 86396534 (+) True LOC118936865
TU1062162 other upstream 135058 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 326701 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 386569 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 436630 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 444505 85893094 ~ 85894737 (+) True LOC118966668
TU1062423 other downstream 103588 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 384475 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 658324 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 779620 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 856057 87195519 ~ 87288556 (+) False G932422

Expression Profile