RNA id: TU1062197


Basic Information

Item Value
RNA id TU1062197
length 221
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G932067
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86342719 ~ 86342939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggCTCCACTCGGAGCGTATCTGCCACTCGCTGCAGATCTTTAGCTGACAGGGCGATGTCGTCTCCGGCCTATCATAACCTCCGCACTGCGCCATCTCCACGGCGACCACCGTTGCCGTACTGTTGCCATGTTTACGGAGAGCCTGACGACAGATGACCTGGCGTTGCTGGGTCCCCGGGCCGCAGGTTCTAGTGCACTCTGACCACTCCCCCAGGTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062195 lncRNA upstream 3257 86339242 ~ 86339462 (+) True G932065
TU1062191 lncRNA upstream 5991 86334061 ~ 86336728 (+) False LOC118936864
TU1062192 lncRNA upstream 5991 86334061 ~ 86336728 (+) False LOC118936864
TU1062193 lncRNA upstream 5991 86334061 ~ 86336728 (+) False LOC118936864
TU1062194 lncRNA upstream 5991 86334061 ~ 86336728 (+) True LOC118936864
TU1062199 lncRNA downstream 1604 86344543 ~ 86344842 (+) True G932069
TU1062200 lncRNA downstream 2985 86345924 ~ 86346134 (+) True G932070
TU1062201 lncRNA downstream 5346 86348285 ~ 86349033 (+) False G932071
TU1062202 lncRNA downstream 5346 86348285 ~ 86349033 (+) True G932071
TU1062204 lncRNA downstream 14612 86357551 ~ 86358364 (+) True G932073
XR_005034313.1 mRNA upstream 6189 86334339 ~ 86336530 (+) False LOC118936864
XM_036934368.1 mRNA upstream 18889 86287581 ~ 86323830 (+) False LOC118936863
XM_036934369.1 mRNA upstream 18889 86287688 ~ 86323830 (+) True LOC118936863
XR_005034312.1 mRNA upstream 84244 86257257 ~ 86258475 (+) True LOC118936862
XR_005034311.1 mRNA upstream 84247 86257257 ~ 86258472 (+) False LOC118936862
XM_036934375.1 mRNA downstream 25880 86368819 ~ 86395066 (+) False LOC110514239
XM_036934376.1 mRNA downstream 25929 86368868 ~ 86395065 (+) False LOC110514239
XM_036934374.1 mRNA downstream 25929 86368868 ~ 86395066 (+) False LOC110514239
XM_036934377.1 mRNA downstream 27956 86370895 ~ 86395066 (+) False LOC110514239
XR_005034314.1 mRNA downstream 52254 86395193 ~ 86396534 (+) True LOC118936865
TU1062162 other upstream 138535 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 330178 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 390046 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 440107 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 447982 85893094 ~ 85894737 (+) True LOC118966668
TU1062423 other downstream 100111 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 380998 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 654847 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 776143 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 852580 87195519 ~ 87288556 (+) False G932422

Expression Profile