RNA id: TU1062490


Basic Information

Item Value
RNA id TU1062490
length 221
lncRNA type intronic
GC content 0.41
exon number 2
gene id G932238
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86553624 ~ 86554576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtatagagacagaacacagagtcATCTGAAACCAGGAAGGATCTTTATATAGTctgagaggtatagagacagaacacagagttTCCATCTGAAACCAGGAAGGACCTTTATATAGTctgagaggtatagagacagaacacagagtCATCTGAAACCAGGAAGGACCTTTATATAGTctgagaggtatagagacagaacacagagttTCCATCTGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062473 lncRNA upstream 21986 86530586 ~ 86531638 (+) True G932223
TU1062467 lncRNA upstream 36961 86515439 ~ 86516663 (+) True G932217
TU1062460 lncRNA upstream 61499 86490343 ~ 86492125 (+) True G932210
TU1062459 lncRNA upstream 62083 86490343 ~ 86491541 (+) False G932210
TU1062457 lncRNA upstream 65428 86487309 ~ 86488196 (+) True G932208
TU1062526 lncRNA downstream 39803 86594379 ~ 86594593 (+) True G932258
TU1062543 lncRNA downstream 111119 86665695 ~ 86666265 (+) False G932268
TU1062544 lncRNA downstream 111119 86665695 ~ 86665989 (+) True G932268
TU1062511 lncRNA downstream 118076 86672652 ~ 86673383 (+) False G932251
TU1062512 lncRNA downstream 118076 86672652 ~ 86673383 (+) True G932251
XM_036934378.1 mRNA upstream 143752 86405457 ~ 86409872 (+) False LOC118936866
XM_036934379.1 mRNA upstream 143752 86405459 ~ 86409872 (+) True LOC118936866
XR_005034314.1 mRNA upstream 157090 86395193 ~ 86396534 (+) True LOC118936865
XM_036934374.1 mRNA upstream 158558 86368868 ~ 86395066 (+) False LOC110514239
XM_036934381.1 mRNA downstream 20889 86575465 ~ 86671952 (+) False LOC118936868
XM_036934384.1 mRNA downstream 21247 86575823 ~ 86671952 (+) False LOC118936868
XM_036934385.1 mRNA downstream 27321 86581897 ~ 86671952 (+) False LOC118936868
XM_036934387.1 mRNA downstream 40168 86594744 ~ 86671951 (+) False LOC118936868
XM_036934380.1 mRNA downstream 40168 86594744 ~ 86671952 (+) False LOC118936868
TU1062423 other upstream 77784 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 349440 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 541083 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 600951 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 651012 85901920 ~ 85902612 (+) False LOC118936495
TU1062558 other downstream 169361 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 443210 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 564506 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 640943 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 826092 87380668 ~ 87390230 (+) False G932466

Expression Profile