RNA id: TU1062549


Basic Information

Item Value
RNA id TU1062549
length 429
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G932270
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86675792 ~ 86676470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062511 lncRNA upstream 2409 86672652 ~ 86673383 (+) False G932251
TU1062512 lncRNA upstream 2409 86672652 ~ 86673383 (+) True G932251
TU1062543 lncRNA upstream 9527 86665695 ~ 86666265 (+) False G932268
TU1062544 lncRNA upstream 9803 86665695 ~ 86665989 (+) True G932268
TU1062526 lncRNA upstream 81199 86594379 ~ 86594593 (+) True G932258
TU1062600 lncRNA downstream 104560 86780957 ~ 86784288 (+) True G932310
TU1062601 lncRNA downstream 121646 86798043 ~ 86799056 (+) True G932311
TU1062603 lncRNA downstream 130588 86806985 ~ 86808585 (+) True G932313
TU1062606 lncRNA downstream 150186 86826583 ~ 86827247 (+) True G932315
TU1062607 lncRNA downstream 152352 86828749 ~ 86829523 (+) True G932316
XM_036934385.1 mRNA upstream 3840 86581897 ~ 86671952 (+) False LOC118936868
XM_036934389.1 mRNA downstream 193 86676590 ~ 86696929 (+) True pgm2
XM_036989419.1 mRNA downstream 28009 86704406 ~ 86830606 (+) False LOC110518842
XR_005034317.1 mRNA downstream 143843 86820240 ~ 86821014 (+) True LOC118936871
XM_036934390.1 mRNA downstream 205955 86882352 ~ 86915711 (+) False LOC118936872
XR_005034318.1 mRNA downstream 205955 86882352 ~ 86916919 (+) False LOC118936872
TU1062423 other upstream 199952 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 471608 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 663251 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 723119 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 773180 85901920 ~ 85902612 (+) False LOC118936495
TU1062558 other downstream 47540 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 321389 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 442685 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 519122 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 704271 87380668 ~ 87390230 (+) False G932466

Expression Profile