RNA id: TU1062601


Basic Information

Item Value
RNA id TU1062601
length 967
lncRNA type intronic
GC content 0.46
exon number 2
gene id G932311
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86798043 ~ 86799056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccagggccctattccctatatagtgaactactagtgaccagggccctattccctatatagtgaactactagtgaccagggccctattccctatatagtgaactactagtgaccagggccctattccctatatagtgaactactagtgaccagggccctattccctatatagtgaactactagtgaccagggccctattccctatttagtgaactactagtgaccagggccctattccctatttagtgaactactagtgaccagggccctattccctatttagtgaactactagtgaccagggccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctatggcaccctattccctatgtagtgcactactttagaccagagccctatggccccctatgtagtgcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccagagccctatggcaccctattccctatgtagtgcactactttagaccagagccctatggcaccctattccctattgaagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctttggcaccctattccctgtatagtgaactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctaaatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtacactactatagaccagagccctattccctatatagtggtactactatagaccagagccctatggcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062600 lncRNA upstream 13755 86780957 ~ 86784288 (+) True G932310
TU1062547 lncRNA upstream 121573 86675792 ~ 86676470 (+) False G932270
TU1062546 lncRNA upstream 121646 86675792 ~ 86676397 (+) False G932270
TU1062548 lncRNA upstream 121646 86675792 ~ 86676397 (+) False G932270
TU1062549 lncRNA upstream 121646 86675792 ~ 86676397 (+) False G932270
TU1062603 lncRNA downstream 7929 86806985 ~ 86808585 (+) True G932313
TU1062606 lncRNA downstream 27527 86826583 ~ 86827247 (+) True G932315
TU1062607 lncRNA downstream 29693 86828749 ~ 86829523 (+) True G932316
TU1062567 lncRNA downstream 33987 86833043 ~ 86889386 (+) True G932285
TU1062561 lncRNA downstream 37575 86836631 ~ 86836900 (+) True G932279
XM_036934389.1 mRNA upstream 101114 86676590 ~ 86696929 (+) True pgm2
XM_036934380.1 mRNA upstream 126091 86594744 ~ 86671952 (+) False LOC118936868
XM_036934386.1 mRNA upstream 126091 86594744 ~ 86671952 (+) False LOC118936868
XM_036934383.1 mRNA upstream 126091 86594948 ~ 86671952 (+) True LOC118936868
XM_036934387.1 mRNA upstream 126092 86594744 ~ 86671951 (+) False LOC118936868
XR_005034317.1 mRNA downstream 21184 86820240 ~ 86821014 (+) True LOC118936871
XM_036934390.1 mRNA downstream 83296 86882352 ~ 86915711 (+) False LOC118936872
XR_005034318.1 mRNA downstream 83296 86882352 ~ 86916919 (+) False LOC118936872
XR_005034319.1 mRNA downstream 83296 86882352 ~ 86916919 (+) False LOC118936872
XR_005034320.1 mRNA downstream 83296 86882352 ~ 86916919 (+) False LOC118936872
TU1062558 other upstream 46379 86723937 ~ 86751664 (+) True LOC110518842
TU1062423 other upstream 322203 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 593859 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 785502 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 845370 85952164 ~ 85952673 (+) True LOC110528615
TU1062664 other downstream 198730 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 320026 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 396463 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 581612 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 588981 87388037 ~ 87389831 (+) True G932466

Expression Profile