RNA id: TU1062619


Basic Information

Item Value
RNA id TU1062619
length 243
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G932327
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86858390 ~ 86860594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagttacctggtgggtcagttacctggtgggtcagttacctggtgggtaacagtagattGAATTGtcattagactagtcagttacctggtgggtcagttacctggtgggtcagttacctgatgggtcagttacctggtgggtcagttacctggtgggtcagttacctggtgggtcagttacctggtgggtaacagtagctgggagtgttattggactagtcagttacctggtgggtcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062608 lncRNA upstream 19947 86837817 ~ 86838443 (+) True G932317
TU1062561 lncRNA upstream 21490 86836631 ~ 86836900 (+) True G932279
TU1062607 lncRNA upstream 28867 86828749 ~ 86829523 (+) True G932316
TU1062606 lncRNA upstream 31143 86826583 ~ 86827247 (+) True G932315
TU1062603 lncRNA upstream 49805 86806985 ~ 86808585 (+) True G932313
TU1062621 lncRNA downstream 3304 86863898 ~ 86864494 (+) True G932328
TU1062637 lncRNA downstream 45968 86906562 ~ 86907712 (+) True G932342
TU1062638 lncRNA downstream 51950 86912544 ~ 86913458 (+) True G932343
TU1062641 lncRNA downstream 80190 86940784 ~ 86941315 (+) True G932346
TU1062650 lncRNA downstream 89838 86950432 ~ 86950646 (+) True G932349
XM_036989419.1 mRNA upstream 27784 86704406 ~ 86830606 (+) False LOC110518842
XR_005034317.1 mRNA upstream 37376 86820240 ~ 86821014 (+) True LOC118936871
XM_036934389.1 mRNA upstream 161461 86676590 ~ 86696929 (+) True pgm2
XM_036934380.1 mRNA upstream 186438 86594744 ~ 86671952 (+) False LOC118936868
XM_036934390.1 mRNA downstream 21758 86882352 ~ 86915711 (+) False LOC118936872
XR_005034318.1 mRNA downstream 21758 86882352 ~ 86916919 (+) False LOC118936872
XR_005034319.1 mRNA downstream 21758 86882352 ~ 86916919 (+) False LOC118936872
XR_005034320.1 mRNA downstream 21758 86882352 ~ 86916919 (+) False LOC118936872
XM_036934394.1 mRNA downstream 21759 86882353 ~ 86915711 (+) False LOC118936872
TU1062558 other upstream 106726 86723937 ~ 86751664 (+) True LOC110518842
TU1062423 other upstream 382550 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 654206 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 845849 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 905717 85952164 ~ 85952673 (+) True LOC110528615
TU1062664 other downstream 137192 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 258488 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 334925 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 520074 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 527443 87388037 ~ 87389831 (+) True G932466

Expression Profile