RNA id: TU1062708


Basic Information

Item Value
RNA id TU1062708
length 212
lncRNA type intronic
GC content 0.36
exon number 3
gene id G932388
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87121032 ~ 87125475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtattggttggttgatgtattggttggtgtattggttggttgatgtattggttgatgtattggttgatgtattggttgatgtattggttgatgtattggttggttgatgtattgatgtattggttggtgtattgatgtattggttggttgatgtattggttggttgatgtattggttggttgatgtattggttggttgatgtattggtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062699 lncRNA upstream 12074 87106248 ~ 87110168 (+) True G932384
TU1062698 lncRNA upstream 12764 87106248 ~ 87109478 (+) False G932384
TU1062697 lncRNA upstream 14326 87106248 ~ 87107916 (+) False G932384
TU1062658 lncRNA upstream 68207 87052848 ~ 87054035 (+) False LOC110511479
TU1062730 lncRNA downstream 16887 87141901 ~ 87155342 (+) False G932401
TU1062731 lncRNA downstream 16887 87141901 ~ 87155342 (+) False G932401
TU1062737 lncRNA downstream 16887 87141901 ~ 87150012 (+) True G932401
TU1062723 lncRNA downstream 39171 87164185 ~ 87167671 (+) True G932397
TU1062770 lncRNA downstream 64608 87189622 ~ 87193354 (+) True G932421
XM_036934401.1 mRNA upstream 68870 87006906 ~ 87053372 (+) False LOC110511479
XM_036934400.1 mRNA upstream 68870 87006909 ~ 87053372 (+) False LOC110511479
XM_036934398.1 mRNA upstream 68870 87006910 ~ 87053372 (+) False LOC110511479
XM_036934399.1 mRNA upstream 68870 87006911 ~ 87053372 (+) False LOC110511479
XM_036934397.1 mRNA upstream 183211 86920572 ~ 86939031 (+) True LOC110512499
XM_036934406.1 mRNA downstream 266058 87391072 ~ 87402637 (+) True LOC118936497
XM_036934419.1 mRNA downstream 330050 87455064 ~ 87465245 (+) False LOC118936875
XM_036934420.1 mRNA downstream 330050 87455064 ~ 87467625 (+) False LOC118936875
XM_036934415.1 mRNA downstream 330050 87455064 ~ 87471566 (+) False LOC118936875
XM_036934416.1 mRNA downstream 330050 87455064 ~ 87471566 (+) False LOC118936875
TU1062664 other upstream 102244 86997786 ~ 87019998 (+) False LOC110511479
TU1062558 other upstream 370578 86723937 ~ 86751664 (+) True LOC110518842
TU1062423 other upstream 646402 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 918058 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 1109701 86011799 ~ 86012541 (+) True LOC110528614
TU1062773 other downstream 70505 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 255654 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 263023 87388037 ~ 87389831 (+) True G932466
TU1062879 other downstream 279773 87404787 ~ 87406846 (+) False G932484
TU1062880 other downstream 279773 87404787 ~ 87406846 (+) False G932484

Expression Profile