RNA id: TU1062788


Basic Information

Item Value
RNA id TU1062788
length 717
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G932428
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87208518 ~ 87210577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAtataccattcactagaggtatagaactatagaccattcactagagGTATATAACTgaagaccattcactagaggtatagaactatagaccattcactagaggtaaaaactatagaactatagaccattcactagaggtaagaactatagaccattcactagaggtatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtatagaagtatagaccattcactagaggtatagaactatagaactatagaccCTTCACTAGAGGTATATAACtgtagaccattcactagaggtatagaAGTATAGACCCTTCACTagaggtatatacagtgccttgcgaaagtattctgcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062770 lncRNA upstream 15777 87189622 ~ 87193354 (+) True G932421
TU1062723 lncRNA upstream 41460 87164185 ~ 87167671 (+) True G932397
TU1062730 lncRNA upstream 53789 87141901 ~ 87155342 (+) False G932401
TU1062795 lncRNA downstream 1440 87212017 ~ 87213680 (+) True G932429
TU1062796 lncRNA downstream 5738 87216315 ~ 87216837 (+) True G932430
TU1062810 lncRNA downstream 43916 87254493 ~ 87257867 (+) True G932438
TU1062819 lncRNA downstream 49402 87259979 ~ 87260783 (+) True G932446
TU1062771 lncRNA downstream 76887 87287464 ~ 87288556 (+) False G932422
XM_036934402.1 mRNA upstream 79482 87057752 ~ 87129649 (+) False LOC110516832
XM_036934401.1 mRNA upstream 155759 87006906 ~ 87053372 (+) False LOC110511479
XM_036934406.1 mRNA downstream 180495 87391072 ~ 87402637 (+) True LOC118936497
XM_036934419.1 mRNA downstream 244487 87455064 ~ 87465245 (+) False LOC118936875
XM_036934420.1 mRNA downstream 244487 87455064 ~ 87467625 (+) False LOC118936875
XM_036934415.1 mRNA downstream 244487 87455064 ~ 87471566 (+) False LOC118936875
XM_036934416.1 mRNA downstream 244487 87455064 ~ 87471566 (+) False LOC118936875
TU1062663 other upstream 82410 87119082 ~ 87126721 (+) True LOC110516832
TU1062664 other upstream 189133 86997786 ~ 87019998 (+) False LOC110511479
TU1062558 other upstream 457467 86723937 ~ 86751664 (+) True LOC110518842
TU1062423 other upstream 733291 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 1004947 86201198 ~ 86204184 (+) True LOC110513338
TU1062854 other downstream 170091 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 177460 87388037 ~ 87389831 (+) True G932466
TU1062879 other downstream 194210 87404787 ~ 87406846 (+) False G932484
TU1062880 other downstream 194210 87404787 ~ 87406846 (+) False G932484
TU1062881 other downstream 194210 87404787 ~ 87406846 (+) False G932484

Expression Profile