RNA id: TU1062796


Basic Information

Item Value
RNA id TU1062796
length 465
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G932430
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87216315 ~ 87216837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTAGACCTACCTATGCAACTGAAAGCTCCATCTGTTATTAACGGGATGCTATAGgtgtaaacccatagatgtaggctaactgttgaaatctgttattaacgggatgctataggtgtaaacccatagatgtaggctaactgttgaaatctgttattaacgggatgctataggtgtaaacccatagatgtaggttaactgttgccatctgttattaacgggatgctataggtgtaaacccatagatgtaggttaactgttgccatctgttattaacgggatgctataggtgtaaacccatagatgtaggctaactgttgccatctgttattaacgggatgctataggtgtaaacccatagatgtaggctaactgttgccatctgttattaacgggatgctataggtgtaaacccatagatgtaggctaactgttgccatctgttattaacgggatgctataggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062795 lncRNA upstream 2635 87212017 ~ 87213680 (+) True G932429
TU1062790 lncRNA upstream 5738 87208518 ~ 87210577 (+) False G932428
TU1062788 lncRNA upstream 5738 87209131 ~ 87210577 (+) True G932428
TU1062770 lncRNA upstream 22961 87189622 ~ 87193354 (+) True G932421
TU1062723 lncRNA upstream 48644 87164185 ~ 87167671 (+) True G932397
TU1062810 lncRNA downstream 37656 87254493 ~ 87257867 (+) True G932438
TU1062819 lncRNA downstream 43142 87259979 ~ 87260783 (+) True G932446
TU1062771 lncRNA downstream 70627 87287464 ~ 87288556 (+) False G932422
TU1062777 lncRNA downstream 70627 87287464 ~ 87287900 (+) True G932422
TU1062839 lncRNA downstream 151265 87368102 ~ 87368636 (+) True G932462
XM_036934402.1 mRNA upstream 86666 87057752 ~ 87129649 (+) False LOC110516832
XM_036934401.1 mRNA upstream 162943 87006906 ~ 87053372 (+) False LOC110511479
XM_036934406.1 mRNA downstream 174235 87391072 ~ 87402637 (+) True LOC118936497
XM_036934419.1 mRNA downstream 238227 87455064 ~ 87465245 (+) False LOC118936875
XM_036934420.1 mRNA downstream 238227 87455064 ~ 87467625 (+) False LOC118936875
XM_036934415.1 mRNA downstream 238227 87455064 ~ 87471566 (+) False LOC118936875
XM_036934416.1 mRNA downstream 238227 87455064 ~ 87471566 (+) False LOC118936875
TU1062663 other upstream 89594 87119082 ~ 87126721 (+) True LOC110516832
TU1062664 other upstream 196317 86997786 ~ 87019998 (+) False LOC110511479
TU1062558 other upstream 464651 86723937 ~ 86751664 (+) True LOC110518842
TU1062423 other upstream 740475 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 1012131 86201198 ~ 86204184 (+) True LOC110513338
TU1062854 other downstream 163831 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 171200 87388037 ~ 87389831 (+) True G932466
TU1062879 other downstream 187950 87404787 ~ 87406846 (+) False G932484
TU1062880 other downstream 187950 87404787 ~ 87406846 (+) False G932484
TU1062881 other downstream 187950 87404787 ~ 87406846 (+) False G932484

Expression Profile