RNA id: TU1062886


Basic Information

Item Value
RNA id TU1062886
length 1503
RNA type TUCP
GC content 0.48
exon number 4
gene id G932484
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87404787 ~ 87406846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatacatacatatatagtgcactactcttgaccaagGCCCATTGGGAAACACGATATAATTATAGGTTGAACACCAATACCTGAAGCAGTAACAAAGCATTGAGAGAGTCCGTGATGACAGTTCACATCTTGTGTTATTTAAGTCGCAGGTTGATGACATCACCGGTCTATATAAAAAGGCAGGATATGAAAGGATCTGTTCAATCTGAAACGACACCCTCTATAGGGCCGTACGTTGGACCAGGAGAGCACCATGAAAGGGGACATTATTTAAGACTCACATTATTTATATCTGTATAAAATCGGAACCAGTGATTGGCCAGTTACAACAGGAAATGAGACAGTATTAATGTGATTGGCCAGTTATAACAGGAAATGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGACATGAGACAGTATTAACGTGATTGGCCAGTTATAACAGGAAATGAGAGACAGTTAATTAATGTGATTAGTCAGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGTCAGTTATAACAGGAAATAAAACCGGCAGCATCAAAACATATTGATTATCAATGATTGTCCTCGTAGAGGAAGAATGatagatgaggggggggggggtgattctGAGGGGTGTGTGTCAGACGTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGTTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGATCAGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagacgtTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGTTGAGgggtgtgtgtcagactgtggtCTTCTTGGTCGGGGGTTCAGGGATGATGTTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGATCAGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagACGTTGGTCTTCTTGGTCAGGGGTTCAGGGTTGATGTTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGATCAGGGGTTCAGGGTTGATGTTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGATCAGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagagtcagACGTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtcagagtcagACGTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagacgtTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGTTGAGgggtgtgtgtcagactgtggtCTTCTTGGTCGGGGGTTCAGGGTTGATGTTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGATCAGGGGTTCAGGGTTGAtgctgaggggtgtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGCTGATACGAGGGACTCCGGCCGTGGGCGTGTAGGGGATACGAGATGTCGTCACCTTCTTACCGATGGTTTCGATCt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062875 lncRNA upstream 3858 87400645 ~ 87400929 (+) True G932483
TU1062851 lncRNA upstream 14956 87388037 ~ 87389831 (+) False G932466
TU1062856 lncRNA upstream 18164 87386218 ~ 87386623 (+) False G932466
TU1062855 lncRNA upstream 23164 87379860 ~ 87381623 (+) False G932466
TU1062858 lncRNA downstream 32517 87439363 ~ 87440003 (+) True G932467
TU1062927 lncRNA downstream 48032 87454878 ~ 87457039 (+) False LOC118936875
TU1062934 lncRNA downstream 55523 87462369 ~ 87463868 (+) True G932506
TU1062935 lncRNA downstream 56288 87463134 ~ 87464648 (+) True G932507
TU1062929 lncRNA downstream 64467 87471313 ~ 87471561 (+) True LOC118936875
XM_036934406.1 mRNA upstream 2150 87391072 ~ 87402637 (+) True LOC118936497
XM_036934402.1 mRNA upstream 275138 87057752 ~ 87129649 (+) False LOC110516832
XM_036934400.1 mRNA upstream 351415 87006909 ~ 87053372 (+) False LOC110511479
XM_036934419.1 mRNA downstream 48218 87455064 ~ 87465245 (+) False LOC118936875
XM_036934420.1 mRNA downstream 48218 87455064 ~ 87467625 (+) False LOC118936875
XM_036934415.1 mRNA downstream 48218 87455064 ~ 87471566 (+) False LOC118936875
XM_036934416.1 mRNA downstream 48218 87455064 ~ 87471566 (+) False LOC118936875
XM_036934417.1 mRNA downstream 48218 87455064 ~ 87471566 (+) False LOC118936875
TU1062854 other upstream 14557 87380668 ~ 87390230 (+) False G932466
TU1062852 other upstream 14956 87388037 ~ 87389831 (+) True G932466
TU1062773 other upstream 116231 87195519 ~ 87288556 (+) False G932422
TU1062663 other upstream 278066 87119082 ~ 87126721 (+) True LOC110516832
TU1062664 other upstream 384789 86997786 ~ 87019998 (+) False LOC110511479
TU1062921 other downstream 48032 87454878 ~ 87471227 (+) False LOC118936875
TU1062928 other downstream 48032 87454878 ~ 87471227 (+) False LOC118936875
TU1062925 other downstream 50668 87457514 ~ 87471227 (+) False LOC118936875
TU1062917 other downstream 53188 87460034 ~ 87471227 (+) False LOC118936875
TU1062920 other downstream 54415 87461261 ~ 87471227 (+) False LOC118936875

Expression Profile