RNA id: TU1062965



Basic Information


Item Value
RNA id TU1062965
length 681
lncRNA type intronic
GC content 0.43
exon number 3
gene id G932530
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87522471 ~ 87523595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaagagagagaggcggaggagagcgagggacagagagaggcggaggagagcgagggacagaaagagagaggagagatatgtaTAGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATATGTAGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATGTGTATAGAGTGTAGTTACCTCAGGAGAGATATGTGGAGTGTAGTTACCTCaggagagatatggatagagtgTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATGTGTATAGAGTGTAGTTACCTCAGGAGAGATGTGTATAGAGTGTAGTTACCTCAGGAGAGATATGTGGAGTGTAGTTACCTCAGGAGAGATATGTAGAGTGTAGTTACCTCAGGAGAGATATGTGGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATATGTATAGAGTGTAGTTACCTCAGGAGAGATATGTGGAGTGTAGTTACCTCAGGAGAGATATGTATAGAATGTAGTTACCTCAGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1062964 lncRNA upstream 3853 87516974 ~ 87518618 (+) True G932529
TU1062956 lncRNA upstream 10310 87511373 ~ 87512161 (+) True G932525
TU1062929 lncRNA upstream 50910 87471313 ~ 87471561 (+) True LOC118936875
TU1062935 lncRNA upstream 57823 87463134 ~ 87464648 (+) True G932507
TU1062934 lncRNA upstream 58603 87462369 ~ 87463868 (+) True G932506
TU1062961 lncRNA downstream 4578 87528173 ~ 87531331 (+) True G932526
TU1062968 lncRNA downstream 11964 87535559 ~ 87536020 (+) True G932532
TU1062985 lncRNA downstream 40289 87563884 ~ 87564441 (+) True G932546
TU1062992 lncRNA downstream 66704 87590299 ~ 87591017 (+) True G932551
TU1062975 lncRNA downstream 98734 87622329 ~ 87623817 (+) False LOC110519305
XM_036934421.1 mRNA upstream 50905 87455064 ~ 87471566 (+) False LOC118936875
XM_036989420.1 mRNA downstream 50072 87573667 ~ 87623845 (+) False LOC110519305
XM_036934438.1 mRNA downstream 106336 87629931 ~ 87655775 (+) False LOC118936877
XM_036934437.1 mRNA downstream 106337 87629932 ~ 87655775 (+) False LOC118936877
XM_036934436.1 mRNA downstream 106338 87629933 ~ 87655775 (+) False LOC118936877
XM_036934435.1 mRNA downstream 106342 87629937 ~ 87655775 (+) False LOC118936877
TU1062921 other upstream 51244 87454878 ~ 87471227 (+) False LOC118936875
TU1062978 other downstream 70845 87594440 ~ 87606505 (+) False LOC110519305
TU1062996 other downstream 106712 87630307 ~ 87655579 (+) False LOC118936877
TU1062999 other downstream 106712 87630307 ~ 87655579 (+) False LOC118936877
TU1063001 other downstream 106712 87630307 ~ 87655579 (+) False LOC118936877
TU1062998 other downstream 111149 87634744 ~ 87655579 (+) True LOC118936877

Expression Profile