RNA id: XM_036934636.1


Basic Information

Item Value
RNA id XM_036934636.1
length 2760
RNA type mRNA
GC content 0.51
exon number 16
gene id gars1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 63442 ~ 88351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACTTGTTTTCTGAGATTTCATCATTCTGTTCCATCCACATTGTCGCTCCGCCCGCGGTCCATGCTTCGTAGCGCAACATCAGCACTGCTGAGGACCAGCATTGAGATTCGCACTCTTCGCTCGGTGCCGAGGGTCTGCCGGTTTCTACAGTCGCTGCTGCGCAGTCCGACACAAAACAGGTCGTTTTCTCTTTCGGTTTGCTTGTGTAAGAAAAATAAAAGTCTTTGGCTGGAGCTTTCCGAAGGACACAAAATGAGTGGCAATATTGAAGAAATCCTCGCCCCACTGAGGCTGGCAGTGAAAGAACAGGGTGAGCTGGTGCGCCAGATGAAACAGGATGGTGCCCCTGATGTTGACGTCCTTAAAGCTGTTGCTGAACTGAAAGCTAGGAAGAGAACTCTGGAAACTAAGGAACTGTCTCTGCAGCCCAAAGATGACATTGTTGACAGAACCAAGATGGAGGATACGTTGAAGAGGAGATTCTTCTATGACCAGGCCTTCGCTATCTATGGAGGTGTGAGTGGTCTGTATGACTTTGGCCCCGTGGGCTGTGCCCTTAAGAACAACATCTTGCAGGCCTGGAGGCAGCACTTCATCCAGGAGGAGCAGATCCTGGAGATCGACTGCACCATGCTCACCCCGGAGCCCGTTCTCAAGACGTCTGGACACGTGGACAAGTTTGCGGACTACATGGTGAAAGACGTGAAGAACGGAGAGTGTTTCAGGGCAGACCACCTCCTCAAAGCTCACCTCCAGAAGCTGATGTCTGATAAGAAGTGTCCTGCAGAGAATAAGGCCGAGATGGAGGAAGTGGTCACTCAGATGGACAACTACACTCAACAGGAGTTGACTGACCTCTTTGTGAAATACAGTGTCAAGTCCCCCACCACAGGAAATGACGTTTCAGCCCCTCATCTCTTCAACCTGATGTTCCAGACGTCTATCGGGCCAGGGGGAAACATGACAGGCTACTTGAGGCCTGAAACGGCTCAGGGAATCTTCCTCAACTTCAAGCGTCTGTTGGAATTCAACCAGGGAAAGCTTCCATTCGCTGCTGCTCAGATCGGCAACTCCTTCAGGAACGAGATCTCACCTCGCTCAGGACTCATCCGTGTCAGAGAGTTCACCATGGCTGAGATTGAGCACTTTGTGGACCCGACTGAGAAGTTCCACCCCAAGTTCCCTAACGTGGCTGACCTGGAGATCATCCTGTACTCCTCCAAGGCCCAGACCAGTGGTCAGTCTGCTCACATCATGAGGCTGGGGGATGCTGTGGAGCAGGGGGTGATCAATAACTCCGTCCTGGGATATTTCATCGGGAGAATCTACCTCTACCTCACTAAAGTGGGTGTGGCCAAAGACAAGCTTCGCTTCCGTCAGCACATGGACAACGAGATGGCCCACTACGCCTGTGACTGCTGGGACGCAGAGACCAAAACATCCTATGGCTGGATCGAGATAGTAGGCTGTGCTGACCGCTCCTGTTTCGACCTGCTGTGCCACGCCCGGGCTACCAAGGTCCCTCTAGTGGCCGAGAAGCCTCTTAAAGAACCCAAAGTAGTCGATATTGTCCAGTTTGAGCCCAATAAGGGAGCCATCGGTAAAGCCTATAAGAAGGACGCCAAACTAGCGATGGAGTACCTAGCTGTCTGTGACGAGTGTTTCATCACTGAACAGGAGATGCTGCTCAACAGCAGCGGGGAGTTCACCATAGAGACGGAGGGAAAGACTTTTAAACTCACCAAGGACATGGTCAGTGTGAAGCGGTTTCAGAAGACCCTGCATGTGGAGGAGGTGGTCCCTAATGTCATCGAACCCTCCTTTGGCATCGGTAGAATCATGTACTCAATCTTCGAGCACACATTCCAAGTCAGAGAGGGAGACGAACAGAGAACGTTCTTCAGCTTCCCTACCACTGTAGCTCCATATAAATGCTCCGTCCTTCCTTTGAGCCAAAACCAGGAATTCATGCCTTTTGTTAAGGAACTCTcTGAAGCGATGACCAAACAGGGCGTGTCCCACAAGGTGGACGACTCGTCAGGATCCATTGGGCGGCGCTACGCCAGAACAGACGAGATCGGAGTGGCGTTCGGCATCACCATCGACTTTGACACGGTGAACAAGACGCCCCACACCGCCACTCTGAGGGACCGCGACTCCATGAGGCAGATCAGGGCCGAGGTTAGTGAGTTGCCAGGAATCATCCGTGATCTGGCAAACGGTGTCATGACTTGGGCTGAGGTGGAGAGCAAGTACCCCATCTTTGAGGGACAGGAGACCAGCAAGAAGGACACTGCCGAGGAATGAAGTTAATCTTACTCAGTATGTCTGTCCTATGAAACGCCCACAGACGTTTTTACATTTCTCCATCCATAGGGACGGTTTTACTGCAACTGTATTTCAGGAAGCAGTCAGTCCTCACGATGTCCTAACACACAACTGCAACCACTGAAATTAAActtcaaaataaatgttatataATCATTGTACTGAACAATTATAAACAGGGTGGCAGAGTAATGATTTGTCCCTGTTCTGGTAAATATTCACCTGCGTACTGGAATCTGCTCagttggagagaggaggggagagagagagtgcgtgagGGGGGGAAGAGATCTTCTCAGCCTGGTATAAAAAGAGAAATGTGTTCAGGTTGTCAGTCTTGtgtggaaagagaagagagacttCCAGTTTCAGGACTGATTAAATGGAAAACATCTCTGGTTCAATAAAGTGAGCCTGCTCTTACTGGAA

Function

GO:

id name namespace
GO:0006426 glycyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004820 glycine-tRNA ligase activity molecular_function

KEGG:

id description
K01880 GARS, glyS1; glycyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063760 lncRNA upstream 25504 36185 ~ 37938 (+) True G933073
TU1063762 lncRNA upstream 32412 29993 ~ 31030 (+) True G933075
TU1063796 lncRNA downstream 20505 108856 ~ 110183 (+) True G933100
TU1063807 lncRNA downstream 40848 129199 ~ 129802 (+) True G933110
TU1063814 lncRNA downstream 52990 141341 ~ 141755 (+) True G933117
TU1063842 lncRNA downstream 91776 180127 ~ 181004 (+) True G933145
TU1063870 lncRNA downstream 119769 208120 ~ 213206 (+) True G933162
XM_036934638.1 mRNA downstream 105001 193352 ~ 307839 (+) False dlec1
XM_036934639.1 mRNA downstream 105080 193431 ~ 307840 (+) True dlec1
XM_036934640.1 mRNA downstream 252290 340641 ~ 378363 (+) True cry-dash
XM_036934643.1 mRNA downstream 303761 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 303779 392130 ~ 438530 (+) False slc22a13b
TU1064305 other downstream 397479 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 473302 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 473663 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 507972 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 636836 725187 ~ 728205 (+) True G933679

Expression Profile