RNA id: XM_036934639.1


Basic Information

Item Value
RNA id XM_036934639.1
length 6046
RNA type mRNA
GC content 0.53
exon number 38
gene id dlec1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 193352 ~ 307840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGGCGGCAGAAGCTGGGAAGAAAAGTGCTACTTTCACACCTTGCCAGACTGCAACCATGCTTGAGGAATCTGAGCCAAGACCCCAAACAGGGTTAGACCCGTCCATGAACCGTCATCGACCTGCATCAGAAAAAACACAGGACATTTCACATTTATTAGCAAGCATCTTCAAGGATCTCTACACAACAGAGATTATTGGGAAAGACACAGTTGCCATTCTTACCAAGACAAGAAGGGGAGGCAACAACTACCATGACAAATATGTGGAGGATCTTCAACAGGTCCATTCAGAGTACAGCCGTCGGATGCGTGATGCTGACATGTTGGAGAACCACATCATTCAGGCTCGGGTCCAGGCCACGGCCACAGAGAGCAGGGCCCACACcaaggtggtggaggaggtgggagaggccTACCAACAGCTGGGTCTGCCTCCAGTCAGGTGGACCTTCATGTGGTGTGTTGACAATGGCCTTCTGAAGAGTAACAACTTGATCTGTCCAGAAGACTACATCACAGGACTGAACCCGCTCATCAAAGCCCCCAGAGCCATGTCCCCCCCAGGCTTTGCCAAGCCGACTGTGTCCTACAACAGACACATATGCTACCTTCCCCAGGACGATGGCTACACAGTGATCCCTCCCCCAGAGCGGACAGCCCAGAGCTTGCTGGAGGAGTCAGAAACGTCCCTCACCCTTGCCTGTAGCTCAGACACCTGCACCCCCCGAAGCCTACCTAGCCAGAAGGTGTGCAGAGTGAGGAAGCCTAAGTGGATGTATGAGCTGAGTGctaagagcagagcagaggagagggctgGCCTTCAGAAACTACAGCACAGACACAAGTTCCTGCGGAACCCCAGATTCCTTCCCCCCAACGCACACCAGGGGGGCAAGTCGCTCATCCTGCTTTGGGAAAAGGGAGACAGGGGAAGGAAGGGGCAAAAGCAGGAGAGATCCCCAGCTGAGCCCATCCCTGTGTTCCTGGCCAATCCACCTGTTGTCTTCTTCACTGACTACAGAGTGGGACAGGTATTTGAGactacagtggagctgaggaacatgacTGCTACCAGCCGACATGTCCGGGtcctcccccccaccacccctcacTTCTCCCTGGGTCTCGGCAGGTTTCCAGGCGAGGGGGGTATCGTAGCCCCTGGGATGTCCTGCCAGTACACAGTACGGTTTGCTCCAGACTCCCTGGCTGACTACCAAGACTTCCTGGTTGTAGAGAGTCAGGCCCAATACCCACTGCTGGTTCCCATCGAGGCCCGCAGACCGCCACCTATACTGACACTGCCCAGTGTTCTGGACTGTGGCTACTGTCTGGTAGGAGGGGTGAGATTCAGACAGTTCCTGTGTTGTAATGAGGGCCTCAGTGCTGGAACCTTCTGTATCCTCCCCCGGAGACAGTGGCCCGCCTCCAACATCAGGTCTGTAGTAACTACCAGCTTTGCTGAGGAGCCCCCGTTTGCAGTCAGCCCCTCCCTATTTGAGCTGCAACCTGGGCAGACCACAGTAGTGGAGGTGGTGTTCTTCCCAATGCTGGCAGAGAGTTGCTCCCAGGTCTTCACCATAGTATGTGACAACTGCCAGGTCAAAGACATCACTGTacaaggtCAGGGCCAGCTGATAGGTCTagagctggtgtgtgtgtctggggaagAAGAGGTCCCTGCTCTCGGAGAACTCTGTGACGTCACAGCTGAACACTATGTCCGCTTCCCCACTGCCAACCCTCACTCCGTCCAACAGAAGACACTCACCATCAGGAACAACACTCACTTGGAGCTGACGTTCCATTGGCAGATCATGCAGCCCAACTTGCAGACCCTCCTCCCTGGGGAGATCCCTGACCCCGCCCACATCCAGTACCACTTGGCCAATGACGATGTGTTCTACGTCAGCCCCGCCTCCGGCCTGCTAACCCCCCTACAGGACCATGAGTTCCTCCTTACATACCAGCCCCAGCagttgATGGACTACCACCGTGTGTGTCACCTGGTAGTGAGGGACGTCCCAGAGCTGCCCAGAGAGGATGAACCTCTGGACACCGCCCCCAAGGTGAACGATGTGATTGTCATGGAGATAGAGGTCAAAGGGTTGACACAGGCCTACCAGGTCCTGTTGGAGCCTTATTCTATTCATATCCCTGGAGAGGTGTTCATAGGCACCACCATCCGCAGGAGCTTCAAGATGTGGAACAACAGCAGATCCAGAATCGCCTTCCATTGGGAGAGGAGCGGTGACTGTCACATCATGGAGGTGGAGCCCCCTGCTGGGGAAATAGAGATGAACGAGTGTTTTGACCTGGAGCTGGTTCTGACCGGAGGGCGACCAGGTGCGGTCATATCCAGACTGCTGTGTCATGTTCAGCACCATCACCAACCTGTTACTCTGGTCATACAGGTCACCTTCAAGGGTCCGCAGGTGTCTGTGACTGTTCCCAGTCTTGACCTAGGTCTAATGCAGCTAGGTGACCAGACCCAGGCCACCATGGTCCTCACCAACACCACTCATCTAGAGGCCTTCTGGAGCCTGGGGCCAGAGAaggcagagaggacagacagtctGGAGTCTGGGAaggcagagaggacagacagtctGGAGTCTGGGAaggcagagaggacagacagtctGGAGTCTGGGAAGGCAGAGAGGACATACAGCCAccacacacagATCACAGTGCAGCCGTGTAAAGGAGTGCTGCCCCCTCTGGCCTCCTGCAGTGTAGACATCCTCTTCAGACCCCTGTTCTGTCAACACTTTGACACCGTGCTTGAGCTGGCTGTGGAGAATGGCCAAGGATGtcacctgtcgGTGCAGGCAGATGTCCACTCTCCTCAAGTGTGTCTGTTAACCTGTGATCTGGTATTCTCTGAGATCTATGTCGGAATTCCTGCCCGGGGATCCATCACCCTGATCAACCAGACCCTGCTGCCTGCTCACTACACCTGGACCATGctCCAGGGCCAGCAGGCGTCTCTGTGCTCGGCTAGTTTCACTCCCTCCTCTGGAACTCTGGGACCCAACGCCAAGAAGGACGTCACCGTGGCCTTCACAGCTTACACTGatATGGAGTTAAGTGCAGTAGCAGCGTTGTGTGAGGTGACAGGGATGAAAGATCCTCTGGTTTTACGATTCTTCTCTACAGCCCAGAGACTCAACGTGTCCTACTCTCTACCTAGAGACTGTCCCGGATTAGAAGCAGAGGACCCTGCTGTATCGTTGGTTCTGGACTTTGGAGACAACGTCCTGTTGAAGCGACCAATTACCAAGCAGCTGGTTATGACCAATCACACAGCAATCCCAGCCCCCTTCACTCTGGAGGCGGAGTACTTCACTGGACACGCCCCCTCACCACCAGCCGGCCAATCGCAGCAGAGGGGCCTGCATGTGAGGAAGCCTTTACACCCTGTCCAAGCTAAGAAAGTAGAGGACAAGGCACAGGAAGGGTTTGTGAGTGGGCTGTTGGCCCATGGAAAGGGCGCAGCGTTCTTCGTCCACCCAGATTGTGGCATTCTGGGAGCGTTTGAGACTCAAACCATCGACATCACATCCTTCACCAACATGTGGGGGGAATACAGAGACCAGCTCATCTGTAAGGTGGGGGACCTCCAGCCCAAGCTGATCCCCATTCAGATGACAGTGATGGGCTGTCCTCTTTACTTCCAGATGATTGGtccacagccagacagacagaaccaggGACCAATCATACGGTTTGGTACTCACGTCTCTGGAGGAGACACAGTGTCCCGCTCTCTACGTCTGAACAACACAAGCCCCTACGATATCCGTATGGACTGGGAGAGCTACAACGTGGACCAGGAGGACAGGAAGCTGCTGGATGTGGTGGTTGCCTACGGAGACGCCTTTCCCCTGAAGGACGTAGACGGCAACGAGGTGGTTGGGGGCGGGGCCATGTCTAATGATACTCCGCCCACTTGGGACCGGAGCCACACACCCAGCACTGAGGGAACAAGCTCCTCCCTCAAGAGCAAGTCTGACcttgaggaggagaaggaggaggaaggatcTGTCCACTCTGCGTCTCCTCAGAAGAGGCTCTTCTCTGTCTTCATCAGGCCGCATGAAGGCAACGCCTCCGACTACCCATACTGCATCACTCCACAGCAGATAAATGTCCCAGCAGGGGGAAGCAGCACCATCCACGTCTCCTTCACTCCCCTGACCCTGTCAGAACTGACCTCTAATGCTGCCTGTGTATCCTTCGCTTTGGGCTTCATGAGCCTTGACTCCAAGGTGTCGTCCTGTATCCCAGGTAAGGTTCaaagggctcagggtcaggatcTGGAACCTCTCAGATTGGACCTCCAGGCCTCCGTCAGACCTGCCGTCCTGTCAGTgcagatggaggaggaagaggagtgtctGGAGTTCTGTGCTGTGGCTAGTGATTTAATACAGGGCGAGCCACACAATGAGATGGTCCAGAGGAAGTGTTCCGTCACACGGACGTTCCAGTTGAAGAACAGTACAGAGATGCCTCTGAGTTTCAGGCTGAGCACCCAGCCTCCCTTTTCTGTACTGCAGCCTAGAGGGTGTGCCGAGACAGCCGGCTGCTCCTCCCCCAGCCACAGCCTCCCACCTGGGGAGAACCAGCTACTGCTGCTGCAGCCACGACACAACAAGCAGGTGAAGGTGGCGTTCCACAGCTCTCTATCCATGCTGGCCTATCTGAGGCAGTCTGCAGAGGAAGTCCCGCCCAACGTGTCTCTGGTTACCaatgagagtggagagaggaagctGAGGTTCCGGCAGACCCTGTCAGTGcattacaacaacaacagtcTGCAGACCGTGCCACTCTGTGCCCACCTGTCCCTGCCCACTGTAAGTCTGTCCTGTGACAGTCTGGACTTTGGTACCTGCTACGTGGGTCAAACCCTGGTCAAGGAGGTCCATCTTTCCAACCGAGGAGGCTCCTCTAGCTACTGGAGAGTAATCATAGActctggtgaggaggaggaagggtcAGAGTTCAGAGTGACTCCTGACTGTGGGGTCCTGAAGCCGTTGGAGTATCCTGTCTCCTCTTCCACACAGCCCCTACAGATCAGCTTCACAGCCAGCAAGGAGAGGGAGTTCCAAGCCACAGCCGTAGTAAAGGGGTTCCTGGGGGAGCCCCCCTTATCGCTACACGTCCAGGGACGCGGCTCCTTCGACCAGAGATTTGTGTCTCTACTTACTGACATTTAGTCTCAGGGGACATGACCTTAACCTGAGAACACTGGCAACAGTTGTGTGCACTCTTTGCATGTATTTATCACGCCTTGTACTTAGTGaatagcacaggaggttggtggcatcttaattggggagaacaggcttgtggtaatgactggagcgtaATAGGTGGAATGGCATTAAAtaaatcaaacacatggtttacatggtttgatgccattccatttgctccatccCGGCCATTACctggagctgtcctcccctcagcagcctccactggtgtgtatgATGTTACTGTATGATGTTACTGTGTACGTTGTTGGTTTATGGAAATGAACAATTCAACTATTCACAAGTGTTTCTGTGTTTTTATTGAGCATGACGCTGAGCTTTCAATGGACTGTTAGAACCCAACTCATAACTCACTATCAACTGTTCTGTCCAGAGGTCCAAGATGATTTATTGTTTTATAATACTGGTATTCTGAACAGAAAGACCTGCATCTGATACCACATTCTGTCACATTCATCAACAAATTTAAATACACTTTGGAAAAAGGAAGAAAGGTTGGAAGTCAATCCAGGGAGGCAAAAAGGACATTGTCGAAGTTTAATTTGGTAAGACAAAAGCTGCGAAAAGAGAGGAGAAataaagagaaggggagggaCAGAAAAGTAATGTTTGGAAATATAGCCTATATATGAAGGGACTATGTGTTGACTATGTGTCAACTTTCACAGTGAAAGCCTTTatttatacattgtgtgtgaaCGAATTGAACATCGTCAAATGCATCACTAAAGAATATtgtgccgacagagatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063842 lncRNA upstream 12427 180127 ~ 181004 (+) True G933145
TU1063814 lncRNA upstream 51676 141341 ~ 141755 (+) True G933117
TU1063807 lncRNA upstream 63629 129199 ~ 129802 (+) True G933110
TU1063796 lncRNA upstream 83248 108856 ~ 110183 (+) True G933100
TU1063760 lncRNA upstream 155493 36185 ~ 37938 (+) True G933073
TU1063915 lncRNA downstream 3058 310898 ~ 311202 (+) False G933202
TU1063916 lncRNA downstream 3058 310898 ~ 311957 (+) False G933202
TU1063917 lncRNA downstream 3058 310898 ~ 311957 (+) True G933202
TU1063942 lncRNA downstream 30458 338298 ~ 338586 (+) True G933222
TU1063946 lncRNA downstream 36788 344628 ~ 344912 (+) True G933225
XM_036934636.1 mRNA upstream 105080 63442 ~ 88351 (+) True gars1
XM_036934640.1 mRNA downstream 32801 340641 ~ 378363 (+) True cry-dash
XM_036934643.1 mRNA downstream 84272 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 84290 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 177852 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 253594 561434 ~ 564576 (+) True LOC118937458
TU1064305 other downstream 177990 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 253813 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 254174 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 288483 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 417347 725187 ~ 728205 (+) True G933679

Expression Profile