RNA id: XM_036934640.1


Basic Information

Item Value
RNA id XM_036934640.1
length 2848
RNA type mRNA
GC content 0.52
exon number 13
gene id cry-dash
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 340641 ~ 378363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcttcacacaaGTCAAGCCCAGCTGTGTCTGCAGGCAGGCAGCATCGGCTACATAACCACGCCGGGAGAGTAGTGCACTCAACACATCTACTATCGCAGACGTGTTTAGCTGTAGAATATGTCTACCTCACGGACAGTCATATGTTTGCTGAGAAACGACTTGCGTCTTCACGACAATGAGGTGTTTCACTGGGCCCAGAGGAATGCTGAACACATCGTTCCCCTGTACTGTTTCGACCCTGGTCATTACCTGGGGACAGCCAACTACAACCTGCCCCGTACCGGCCCCTTCCGCCTGCGCTTCCTACTGGACAGCATCCAGGACCTCAGGACCAGTTTGATACAGAGAGGCAGCACCCTGGTGGTGAGACGGGGCAGGCCACAGGAGGTGGTTGGTGACCTCATTAAGCAGCTAGGTTCTGTTAGCGCTGTGGCCTTCCATGAAGAGGTGGTGCCAGAGGACcagcaggtggagagaggagtgagggataTTTGTTCTCAGATGAAGGTTAAAGTTCACACCTGCTGGGGGTCGACACTATACCACCGAGACGACCTCCCTTTCAACCACCTATCCAGGCTGCCTGACGTATACACCCAGTTCAGGAAGGCAGTGGAAACCCAGGGCAGGGTGAGGCCGGTCTTGCCCACCCTAGACCAGCTGAAGCCTCTCCCCCCTGGGTCAGGTCTGGATGAAGGCCTCATCCCCTCCCCAGAAGACCTGGAGCAGACAGATACTGTGAGGGACCCTCGCTCTGCCTTCCCCTGCAGCGGGGGAGAGACTCAGGCCCTGGCCAGACTACAGCACTACTTCTGGGACACGGATGCTGTGGCTACCTACAAGGAGACTCGTAACGGCCTGATAGGACTGGACTATTCCACAAAATTTTCCCCATGGTTGGCTATAGGCTGTATCTCCCCTAGGTATATCTACCAACAGATCAAGAAGTATGAGAGTGAACGAACAGCCAATCAGAGCACATACTGGGTAGTATTTGAGCTGCTCTGGAGAGACTATTTCAAGTTTGTAGGAGCCAAATACGGAGACAGACTGTTTGACATCAAAGGCCTTCAGGACAAATCCATCCCTTGGAAGAAGGACATGAATCTGTTCAATGCATGGAAAGAGGGTCGTACCGGGGTGCCGTTCGTTGATGCCAACATGCGAGAGCTGGCGCTGACGGGGTTCATGTCTAACAGGGGTCGCCAAAACGTAGCCAGCTTCCTCACCAAGGACCTGGGACTAGACTGGAGGATGGGGGCCGAGTGGTTCCACTACCTTTTGGTGGACCATGACGTGAGCAGTAACTATGGTAACTGGCTATACAGCGCGGGGATAGGAAATGACCCGAGAGAAAACAGGAAGTTCAACATGATCAAACAAGGACTCGACTACGACAACAACGGGGACTATGTTAGACACTGGATCCCAGAGCTCAAGGGGATCAGAGGGGGGGAGGTCCACGCCCCATGGACCCTTAGCTCCGCCTCCCTGTCTCACGCACTGGTGTCCCTCAACGACACATACCCTTCCCCCATTGTCATGGCACCAGAATGGAGTCGCCACACCAACAAGAAGCCGACTGGTGCTGGGCCCTCGACCAGAGGAAAGACTGGTCCATCCCACACCCCTAAACAACACAAGGACAGAGGAATAGACTTCTACTTCTCCAAGAGCAAGAACTTCTGATGGAGCAGACTGACTGAAAAGACTGAAAGAACTGTTGGGCTTCCGCAAGGAAATGGTTTGACCCATCCCCGCTTTGTATGGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCACTTTGTATGGGTAGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCACTTTGTATGGGTGGATGGTTTGACCCATCCCCACTTTGTATGGGTGGATGGTTTGACCCATCCCCGCTTTGTATGGGTGGATGGTTTGACCCATCCCCGCTTTGTATGGGTGGATGGTTTGACCCATCCCCGCTTTGTATGGGTAGATGGTTTGACCCATCCCCGCTTTATATGGGCAGATGGTTTGACCCATCCCCACTTTATATGGGTGGATGGTTTGACCCATCCCTGCTTTGTATGGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGTTTGACCCATCCCCACTTTATATGGGTGGATGGTTTGACCCATCCCCGCTTTGTATGGGTGGATGGTTTGACCCATCCCGCTTTATATCGGTGGATGGTTTGACCCATCCCCGCTTTATATGGGTGGATGGGTTGACCCATCCCCGCTTTGTATGGGTGGATGGGTGTGTGACACGTGGTTTTGAGAAGGTACTGCTGAGTGGGTGGATGGGTGTGTGACACATGGTTTTGAGAAGGTACTGCTGAGTGGGTGGATGGGTGTGTGACACATGGTTTTGAGAAGGTACTGCTGAGTGGGTGGATGGGTGTGTGACACATGGTTTTGAGAAGGTACTGCTGAGTGGGTGGTGTGATACAGACAACTATTTTGTTTCTGTTTTATTGCCACTGTTTTTTTATGTTTCATATGTTTTATCAATTTCTATTGACTTGTTACATCACAGAACCATTTGAGGTAGTACCTGTATTGGTTGTTTTTTACTCTCTACAAAAGCAGCCATATCTTTATAATGGTTCATAATAAACATGTTGATGCTGGTT

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003913 DNA photolyase activity molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063942 lncRNA upstream 2055 338298 ~ 338586 (+) True G933222
TU1063916 lncRNA upstream 28684 310898 ~ 311957 (+) False G933202
TU1063917 lncRNA upstream 28684 310898 ~ 311957 (+) True G933202
TU1063915 lncRNA upstream 29439 310898 ~ 311202 (+) False G933202
TU1063894 lncRNA upstream 67461 272874 ~ 273180 (+) True G933185
TU1063962 lncRNA downstream 2783 381146 ~ 381378 (+) True G933240
TU1063967 lncRNA downstream 11109 389472 ~ 389684 (+) True G933245
TU1063968 lncRNA downstream 12408 390771 ~ 391077 (+) True G933246
TU1063984 lncRNA downstream 25024 403387 ~ 405536 (+) True G933258
TU1063989 lncRNA downstream 28978 407341 ~ 407956 (+) True G933261
XM_036934639.1 mRNA upstream 32801 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 32802 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 252290 63442 ~ 88351 (+) True gars1
XM_036934643.1 mRNA downstream 13749 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 13767 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 107329 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 183071 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 197277 575640 ~ 604339 (+) False LOC110536523
TU1064305 other downstream 107467 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 183290 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 183651 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 217960 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 346824 725187 ~ 728205 (+) True G933679

Expression Profile