RNA id: XM_036934643.1


Basic Information

Item Value
RNA id XM_036934643.1
length 1744
RNA type mRNA
GC content 0.52
exon number 9
gene id slc22a13b
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 392112 ~ 438530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTTGTTGAGGCCTTGAATTGAAGTTATTCATTTTCTAAAGGTTTGTAGAGTAAGGAGTTATTTTACACACGCAGATGACCGGGTGACACCTGATAACACTCCTGTGAGTGTGTTATGACAGATTAAACATTAATTTATCTACCCACTAATGCCCTCCTACCAATGGAAAGGTGTTAAACCTCCACTTGACAAACAATCTCCTATCGAACACTTCCAGCCTGTGTGTTGCACCAACACCTGTGACTGAAGATGAGCTCCGGGTTCGGGCAGGTACTGACAGCGGTCGGGGAGTTCGGAACATTCCAGAAGCAAATGTTGGCTGCGATATGCTTCCCGAACATCTTCAACGGGTTCCACATGTTCTGTCAGGTGTTTACGGGGATGAACTTCCCTCATCACTGTAACACCGACTGGATCAGGACGCAGGGACCCAACCTGACCAACGATAGGCTGTTGAACCTCACCCTTCCACCGCTGGAGGATGGCCCTGGGTTCCAGTCCTGTAAGATGTACACTCCGGTGGATCTGGACTTGCAGACTATTGAAGTGTATGGGATAAACAGTACCATCTCCTGCAGGGATGGATGGAAGTATGAGGCTCCCCAAGGGACCACCAGCCTGGTGACTGAGTTCAACTTGGTGTGTGCCAACAGTGGTCTGAACGAGGCGTCCCAGTCCATCTTCATGGCAGGGCTCCTGATCGGTGCTCTGGTGTTTGGGCCAATGGCAGACAGgtATGGTAGGCGTTTTGTGGTCCTCCTCTCTTTGCTCGTCCAGCTGTTGTTCAGCGTGGGAGCAGCCTTCTCTCCCAACATCTATGTTTACATAGCCTTCAGATTCATGGTCGGCACCACCATCTCAGGCGTCGCTATAAACACGTATGTCTTAGGTGCTGAGTGGACTGGTAACAACAAAAGGGCTCTGTtcaccatcttctcccactgtTTCTATGCCATTGGTCTGATGCTGATGTCTGGGATCGCCTACGGGGTCAGAGACTGGAGGATCCTACAGCTGGTCCTCTTCAGCCCTGTCCTGTTCCTCGGGGTATTCTACTGGATCCTCCCAGAGTCAGCTCGGTGGCTGATGACCCAGGGTCGAAAGGAGGAGGCTCGCCAGGAGGTCCGCAGAGCAGCGAGAGTCAACAGAAGGGAGGTCCCTGAAGCCCTGCTGGACAAGCTGGAGGAGGAGGGCTCGACCAAGACGGGCAGAATGTTGGACCTCTTCAGGATCCCCTACTTGAGAAAACGGGCTCTCATTCTCTGCTATATCTGgtTTGTAACCAGTCTGGTGTACTATGGGGTGAGTCTAAACGTGGGTAACTTTGGTCTGGACATCTATCTGACCCAGCTGATCTTTGGCATTGCTGAGCTCCCTGCCCGACTGGGCTCCCTGCCCCTCATAGAACACTTTGGACGGAGGATGTGTCAGGCCATCGCCCTGTTCTTCGGAGGCACAGCCTGTCTTGTTCTTCTAGCTGTTCCAGATGACATGCCAGTAGTGACGACAGTCATAGCCGTGTCAGGGAAATTTGCCCTGGCTGCCTCCTTCACCATCATCTATGTTTACACAGCTGAGCTCTATCCCACTGTAGTGAGACAGAACGGAGTGGGTCTGAACTCCATGTGTATTGTTTTGCAGACAGAACGGTGTGGGTCTGAACTCCATGTGTATTGTCTTGCAGACAGAACGGAGTGGGTCTGAACTTCCTGATCTGTGTATTGTCTTGCAGACAGAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063968 lncRNA upstream 1035 390771 ~ 391077 (+) True G933246
TU1063967 lncRNA upstream 2428 389472 ~ 389684 (+) True G933245
TU1063962 lncRNA upstream 10734 381146 ~ 381378 (+) True G933240
TU1063946 lncRNA upstream 47200 344628 ~ 344912 (+) True G933225
TU1063942 lncRNA upstream 53526 338298 ~ 338586 (+) True G933222
TU1063971 lncRNA downstream 1527 436986 ~ 438034 (+) True slc22a13b
TU1064017 lncRNA downstream 23891 459350 ~ 459708 (+) True G933287
TU1064288 lncRNA downstream 36090 471549 ~ 471782 (+) True G933520
TU1064290 lncRNA downstream 37857 473316 ~ 473542 (+) True G933522
TU1064292 lncRNA downstream 42135 477594 ~ 477935 (+) True G933524
XM_036934640.1 mRNA upstream 13749 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 84272 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 84273 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 303761 63442 ~ 88351 (+) True gars1
XM_021620013.2 mRNA downstream 50233 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 125975 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 140181 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 196664 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 307033 742492 ~ 859531 (+) False LOC110535150
TU1064305 other downstream 50371 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 126194 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 126555 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 160864 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 289728 725187 ~ 728205 (+) True G933679

Expression Profile