RNA id: XM_036936628.1


Basic Information

Item Value
RNA id XM_036936628.1
length 2624
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC118937458
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 561434 ~ 564576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACCAccaAGTCCATCCTGAAGAAGGCTAAGTGTGAGCAGGGTGGGCGGGGCAACGTGACCTTTGACATGCTGACAGTGTTCCTGTTCCCGCGGTGCCAGGGCTACAGCAGCGTGCCCAGTAGGGGGGGCTGTTCTCTGGGCATGATGCAGCGCCACAGCGCCCTCCGCAGGTACACCCTGGATGAGTACGCTGTGGAGCAACACACCCTCCGCCGGGAGAAACTCCTCGACCGCCTCCGAGAGGAGAAACTGGATGCTCTCAAACAGAAGCTGACTAAGGGAGGCACGGTGGAGTCAGAGGAGGCTGACCGCCTCACCGTCGAAGACATCCCAGAGGACGAGATGGACATTAGCAGCTGTAACCTAGACGACGGCTCCTtcctccacccctacccctcCAAGAGGAGACATGCCCTGCTGAAGGCTGCGGGggtgaaggtggagaaggaggagaagaggcagCTGCAGCAGCTCAGAGTGTCCAGGGAGGACTGTGGGTGTGACTGCCAGGGTTTCTGTGAGCCAGAGACCTGCGCCTGCAGCCTGGCAGGCATCAAGTGTCAGaTGGACCACTCGTCATTTCCCTGCGGCTGCACTAAGGATGGCTGCGGTAACCAGGAAGGTCGTAAAGAGTTCAACTCCAGCCGGGTTCAGACCCACTACATCCACACCATCATGAAGCTAGAGCTGgagaagagactggaggagaCGTCTGGACCAGAGGAAGAGGACCTGGAAGAGACCGCCCCATGTCACTACTACAACCCCTTGTCCAACCTCCCCTCCGTCCCAGACCGCTCCTCCTTCCACTTCATCTCAAAGCTGGCGGCGGTCAGGGAGAACAGCTGTAGTAGCGACATGACCgactcctctgcctcctctgggGGGAGTGAATACTCAGAGGAAGGGGCGGagttagtggtggggttagggcgGCGCTCCCGGGAGGATGGCCCTCTACTGGATGATGTGGATGAGAACGGACTGAGCCGCATCCTCAGCTTCAGTGACATCGACGACTACAATGTAAACAACCGCGTTGTCAATGACAACCGCTGCTGCCCCGAGCAACGTCTACAGCAACAGCCGTGGATATTGACAGGGTTTATTACGGCAGACTTCCAAGAGGATAATAACAATCTGGAGGTGCACAGAGACAACCGGGCCATGGCCATAACACAACTGTTAGATGATAACGCTAACCAAGGCAACGCTCTGTTCCACCACAGCGGCTGCAGTGTCTCCAACATGCCCTCTTCCTCAGTAGACTGCCCCAACACCCCCTCTTCCTCAGTAGACTGCCCCAACACCCCCTCTTCCTCAGCAGACTTCCCCAACACCCCCTCTTCCTCAGTAGATGGCACCGCTGCCAGCCTGTCCTCAGAGTCTGACTTGGAGTTCTTTGATGGTTTCTGTCTGGGTACTTCCTCCCTCTACAACTCCCTAAAGGAATACCAACACATGGACAGCTTCTTTCACTTCCAGTTGCCTAGTTACCCCAGCAGCCAATCACAGGCCAGTGACCCTGGGGCCTGTCTCCTGGAGTctctgattggtctgtcagaatcTGTCCCAGAACCCCCTGCAACGTTCAGACAATCAACCGGACCTGAACTGCCAACTGTGTTCTGGGCTATGCAGTGAATTAGTGGGGACGGTAGGTAAACTGCTGTTGGAAGAAGCTGTGATTTCTCGCTCCCCTGACTATTGTTAATGAGATTCCGTTCTTGCCTTCCAAATCTTAGCAAAAGCAGTTGGTAATTTTTGCTGTATGAAATGGCAGCGAACATTTAATTTGGAAAAAAGAAAGTGAGACTAACATAAAAGTGTTAAACGCTCGATTGTGTAATCTGAGTCATGTATCTGTGACCATACGCTGATGCCGTGTGCTGGAGCCAAGCCTGCCCCtccacactaacacaacacagagGGTAACTGGTGTTAGTTGCTGTTCTGTTTGGGGACATGGTCAGTAGGGAATCTTTAAACGTTGCTGAATGTCAACCTCAGGGACTTTTTCTAGCTTTAGGAAGCAGACCGTTGTGGCCATTGAAACACTGTGTTGcgtttacagacacacacagacacacacagacacacacagacacacccccaCTAGAATCACAACGTCCTCATAACCCCGTTTCCCATGACGTCTCTGTGCTCCGTCCCAGTTGACCGGAGTAAGGGGGGTGGTCAACCCCTGTGTTTCATCCTAAAGCTAGAAAGCCCCCATAATGGTGCCCAAGGCTCTGGTATGGTACAGCAGTCCCTCCGTAAGCCCCTTGGTCAGCACGTCATCTGTGAAACTGATGATTGATGAACCATAACTTCCTGGTTCTCCATCTATGATTGACTTTTACTTgcaatttgttttttgttttttattttatgatTTTCAATTTATTTTCAGATAAAAATGCCTGCTAAACGTAGGTTCAAGCAGCAGTTTGATATTTATAACCTGGAAATGCAATCTTACTTTAGGTATCAGtgactttgtcccaaatggctccctattccctatatatagtgcactacttcagaccagagccctatggctccctattccctatatatagtgcactacttcagaccagagccctatggctccctattcc

Function

GO: NA

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064325 lncRNA upstream 37816 518896 ~ 523618 (+) True G933552
TU1064318 lncRNA upstream 49661 508049 ~ 511773 (+) True G933545
TU1064292 lncRNA upstream 83499 477594 ~ 477935 (+) True G933524
TU1064290 lncRNA upstream 87892 473316 ~ 473542 (+) True G933522
TU1064288 lncRNA upstream 89652 471549 ~ 471782 (+) True G933520
TU1064354 lncRNA downstream 11115 575691 ~ 596004 (+) False LOC110536523
TU1064360 lncRNA downstream 16942 581518 ~ 595816 (+) True G933583
TU1064363 lncRNA downstream 19817 584393 ~ 589797 (+) False G933585
TU1064364 lncRNA downstream 24467 589043 ~ 589797 (+) True G933585
TU1064366 lncRNA downstream 40102 604678 ~ 608464 (+) True G933586
XM_021620013.2 mRNA upstream 19081 485692 ~ 542353 (+) False LOC110535152
XM_036934642.1 mRNA upstream 122904 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 125975 392112 ~ 435459 (+) False slc22a13b
XM_036934640.1 mRNA upstream 183071 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 253594 193431 ~ 307840 (+) True dlec1
XM_036934647.1 mRNA downstream 11064 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 67547 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 177916 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 177916 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 177916 742492 ~ 859531 (+) False LOC110535150
TU1064305 other upstream 22022 485830 ~ 539412 (+) True LOC110535152
TU1064355 other downstream 31747 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 160611 725187 ~ 728205 (+) True G933679
TU1064658 other downstream 384955 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 742951 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 923500 1488076 ~ 1496014 (+) False G934256

Expression Profile