RNA id: XM_036934654.1


Basic Information

Item Value
RNA id XM_036934654.1
length 5709
RNA type mRNA
GC content 0.52
exon number 16
gene id nktr
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1389373 ~ 1479628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTGTTTAACATTTGAGATTTGCAATTTTGTTCATGGTTCTAGGTCGATTTTGAAGCATTTTTAACTAAGACCCTGCTCTTTAATGTGAACTAACCAAATGAGCCGGCTCACAAATACTCGAAAGGCTCATCCCTAACGAACTCGAGCGGGAAATACATCTTATTTTAGCTGCATTCACCATACAGTGTTAGAAGGCATCGAAACGGCTGCAGGGTGTCATGTAAAAAGTTACAACATGCCGTCACGATCTGAACGCCTCGGAACTAATTTCACGCTGGGAAGATTTTTAGCACGGACCTTTTTAACATGACACAGTCgattgactgatctacaaatcaccttgcatcaaaTAACAGCTCATTATTTGTTGATCAGTCAGACAAATTACCCATGATACATTGCAGTTTTGATCCTCGCACACGGCTGTTGCATTCATACAACGCCCAGCTACGGTGCGCAGATCACAGGTGTCCCAGTCTGCTCTGTGGTCAGGATGGGGGTGAAGGAGCGTCCTCAGTGCTACTTTGATGTGGAGATCAACAGAGAACCAGTTGGACGTATAGTCTATCAACTGTTCTCCGATGTCTGTCCCAAGACTAGCAAAAACTTCCTCAGTTTGTGCACTGGTGAGAGAGGAACTGGGAAAAGCACAGGGAAAAAGCTGTGTTTTAAAGGCTCCACATTTCACAGAGTTGTAAAGAACTTCATGATACAGGGAGGAGACTTCACAGAGGGCAATGGAAGAGGAGGGGAATCCATATATGGAGGCTACTTTGAAGaCGAGAACTTTATTCTCAAACACGACCGAGCTTTCCTGTTGTCCATGGCCAACCGCGGCAAACACACCAACGGGTCCCAATTCTTCATAACCACCAAGACAGCACCTCATCTCGATGGGGTCCATGTGGTGTTTGGCTTGGTCATCTCAGGCTTTGAGGTGATCAAGAGGATTGAGGGTCTGAAGACGGACGGAGCCAGCAGGCCGTACGCTGATGTTAGGGTTATGGACTGTGGTCAGCTCATCACTAAGTCAGCCAACGATGTTCTGGAAGGAAAGAGGAAGCGGCGGTCGCATTCTGCAGACTCCTCCCTCAGTTCTCCTGGCTCCTCTCAGTTCTCCTCTCTGGAGTCTGGGAGTGAATCTGAGGAGAAGCACCACCATCACAGGCGAAAGAGACACTCCAAGAGCAAACGCtccaagaagaggaggagagagagggaggtgaagagagagggtcACACTGACAGGGTGGAGCCTGGTCTAAAGGGCCctgtggatggagggatggtggcggtagctgtggaggaggagggtggagggaaggagcagAGTGGTTTGAAGAGAGAGAAACCAGTAGTTCGTCCAGAGGAGATCCCTCCTGTTCCTGAGAACCGCTTCCTATTGAGGAGAGACCAGCCGGGTCAGGAGGACCAACCAGACACAACTAAGTCAGAGGTCTCCTCCCTTCCCAATGACCTGAAGCAGTCAGTCACCAAGTCTGGACGCAAGATCAAAGGCAGAGGGACAATGAGGTACCACACCCCGACGTGCTCTAAGTCGCACTCGGCTTCGGAGGAGGAGGGACAAGGAAGCAGCGAAACCCCGCCCCACTGGAAGGAGGAAATGCAGAGAACCAAGACCTACCAGCCACCCAGCGTAGAGAGATGGAGCCGAGGAGACAAATTGAATGACCGTTGTTCCTGCAGATGGGAGGGAGACCGCAGCAGGAGTGACTCCCCATGGTCCCAGTCCCCGGAGTGCTCCTCAGGCCACAGCACTGACCGCTCCAGCCAGCCCCGCCCACacaggaaggagaagaagaaagccAAGCGCAAGAAGGCCAAGAGACGCAAACATGCCAAGAGACAAAAGAAGGAGTCCACCAAGAGCAAAGAGCCCAAACAGTCGCCCGTCCGAGAGGGTCATTGGACAAATCCTGGTGATATTGAGAGAAGGTCCCTCTCAGTGTCCCGGACCCCTTCCGCCCACAGACGCTCCCTCAGAAAGCAGTGCTCCGGGTCGGGCAAGCGGCatcactcctccccttcatccagAGACTCCAGTTCCTACACACCTAGCCGCTCCAGATCCAGGGGCAGGTCTGTGTCTTACTCCCAGTCCAGGAGTCTGTCTCACTCCAGAAGCAGGTCTCTATCTATGTCAAGGTCCACATCCAGGTCTCGATCCAGATCCCGGTACAGATCCAGGTCCAGGTCTTTGTCCCGGCTCAGGAGGAGAAAGGCAACCAGATCCTCCAAAAAATCCAAGATGGCTGACGTCAGCAGGCTAAAGCCAGACGCCTCAGCCGCAGGGACAGTGAAGGGTGTAGACACCAAAGCCACAGCCCTCCCTGCCACCCCAGCCCCTGAGAACGCCCCTGTCATACCCATGAGTGACAGCCCCCCTCCCTCACGCTGGAAGCCCGGCCAGAAACCATGGAAACCCTCCTACGTCCGAGTCCAGGAGGTCAAGACCAAGACGACCCCAGCCTGCCTGTCCCCCATAGGCCCCACAGCCCCCAGTACATCTGATAACCACCCAGATAACTCCCACCTGGAAAAGAGCCGTGGCTCTAAGAGCCACAGACACCAGAGACGATCACCCAGCGGCTCCTACAGGAGCAGGTCCTACAGCCGGTCTCACAGTCACTCCAGGAGTCACTCCCGGTCCAGGATACGGTCACCAGGTCCCTACTACAGCAGATCCTCCTCCTACAGCAGGTCAGACTCCTATGACTCTCACAGGAGAGGCCTAGACAAGACCTTAGACAAGACTATAGACAAGGGCTGGAAACAGTACTACAGCTCTCTGAAGCGGATCAAGAACCTGGATAAGTACCTCAAAGCGCCTGACTCCCAGATCAACATGTTTTCATCTGACTCTGAGGACGGAACAGCCAGCGAACACAGTCCTGGGCCCAGGCAGAATGGCTCCAAGGGACCAAAGCTCTTTGGCATCTTATCAGAAGACCGACGTCATCAGGAAACGGAAGCAAAAAGTCTGAAACCAAACCAAAAGTCCTTGGAGGAACCCAGCAGTAGGTCAGAGTGGGACAGTGACGGGGATAAACTAGGCAGAAAGACCAGCCTGGTGAACAACCAGAAGCCTGATGTTAGGTCAGCAGAGATTCCTGACCAGAGACTAGCAGCTCTCGCTGGGTGGGACTCTGAGAGCGACTCTGAGAAGGTGCTGCCCAAGATGGCCACCACCGAGCCCAAGGTCTTCCTGTCAGAGAAGGAGGAGGGCGAGGCCAGCTCCGAGTCAGAACATGAACACCATGTACGGTCACACAGCAAGATGAACAAAGCCCCTGGAACCTCTGTGTTGCTGCTTCCTGCACCTGTACATAATGCCACCCCATTGGAGGGGAGCCCTGAGAAGAGCCCCGAGGCAGAGAGACACAAGAGCAGGAAGAAGAACAAACGTAAACACAAACGCAAGAGGAGGAGCTCTGCCAAGTCTGGCTCCCACAGGTCAAAGGTCAAGTCAAAGCGGTCCAAGAGGAAACACCAGAAGCTGAAGGAGACATTCCACTGGCAGCCGCCAATGGAGTttggagaggatgaggaggaggatgagtcccagaaagagaAACGTCTGGAGCAAAAACATACTGCTGTAAAGGATAGTCCTCAGAGAGCTGTCAGGGGAAGACCTGGCAAATCCCCATGTCTGGAAAAGGAGGACAAGGAGAGAAGTCCTGCTTCACCCAACAGAAACAGTTCAGTACAGCCAATGCCTCACAGCGTGGAAGATGCAGCAGAGATTACCAAAGAACTGAAAGCTAAACCAATTGCCAACTCGAACCCAAAACACTCAAAACCTCAGGACCTCACTGCTAACCTGCCAAAGATGGATCAGCCAGAGATGGTAGACGATATGGAGATCTGCACCCCAGAACATGACCTCCCTGACCCCACTACCGAGCCACCAGGCCTTCCGGGCCAACAGGCACCAGATATCAGTCTGAAAACACTGTCTCCTCTGAGTCGCTCCTTAAAGAAGGGAGACGTGTTTCTCTCACCTGTTAAAGATCCACAGTGTACAGCATCTCTGCCAGCTGTGATGCTAGCTAGTGGGGAGCAGCAGGAAACTGCAGCAGGCAGAGCCGCTGGTCCTCCTGTCGACCCTAAATGGAAGCCTCTAAAGGGGATGGCTGCTCTGCAAGCCCTGAACCCAAACCCCTCCTCCCTGGCTCGTCTGCTCCCCACCAGACTCCCGGAGCACAGTGGGCCCCGGACCCAGCCCCAGGAAGGCATCAGGCCCCAGGGCAGCAGGACCCAGAGCCAAGGCGGGAGGACCCAGGGGGGAGTCAGCATCCAGATCAAGAGCCAGAGCCGGGTGCGTCCGGGGTCGCTGTTCGACGAGGTACGGAAGACGGCCAGACTGAACCAGAGGCCCAGGAACCAGGACAGCAGTTCCAGTGAGGAGAGGTCTCAGTCTGCAGCTGGAGCCGGGGGAGGGGCCACGGAGAAGGAGCAGGGAAGCAGGAGGTCCCGGTCGGGGTCTAGCCCCTCCCACAGGTCCAGGTCCAGAGGAAGATCCCCCTCCTCCAGCCGCTCCAGGAATAGATCGCGCTCCTCCAGCTACTCCTCCAGGAGtcggagcaggagcaggaggaggtATCCCAGAGGGCGCTCCCAGTCCCGCAGCATCACCTACCGCAGCTACAACAGTCATAGTCGGACCTATAGTAGAAGTAATTCCAGAAGCCGTTCTTATGATCGACGCAGGAGATCCAGGTCTGACTCCTATGACACTTACTCCAGTCGGAGTCGTAGCCGCAGCTCCAGCAGGAGGCGTGGGAGAAGGAGTGATAGCTACAGGAGCTCCAGGTCTTACCACTCCTCTAGTCGCAGCTCCTCCCGACACTGGAGTCACAGTGGAAGATACAGTTGAGCTGGATCATGTCTgttaccgtctctgtcctgatgaTTCATGAGTCTGTTTCTGTCCTGATGATTCATGAGTCTGTTTCTGTCCTGATGATTCATGAGTCTGTTTCTGTCCTGATGATTCATGAGTCTGTTTCTGTCCTGATGATTCATGAGTCTGTTTCTGTCCTGATGCTTCATGAGTCTGTTTCTGTCCAGATGCTTCATATGGGTTGATCTGGTTCAtgattctgtctctgtcctagtGATTCATGTGGGTTGCTCTGGTTCAGGAGTCAGTTTCTGTCCTGGTGATTCCTGTGGGTCTATACAGCTATCATGCCTACTCCCTGTCACTCAGTGTAATACCGAACTGGACAagagtacaaacagatctgggaccaggcatgCCTCCTTTTGTTCTCTCATCTTCTATTGGGAACTTATTTGGTTACTTCTTATATAGAGGGAAAAGTAATGACCTGTATGTCATTTGTGTGGCTATCAGAAagcaccccttgacttattccacattttgttagaacctgaattcaaaattgattaattaTCTATTTTCTCTCACACATCTGCACACAAAACCctctaatgacaaagtgaaaacatgtttttagacattctTGCTAATTAATTGAAAGTTAAATAGAGAAATATCTCCTTTATGTAAgtattgacatttttttttttttttttaaaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatgggtttgaacttgcaaccttccggttacttgtccaacgctctaaccactaggctaccctgccgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065152 lncRNA upstream 22072 1363369 ~ 1367301 (+) True G934219
TU1065119 lncRNA upstream 62745 1320225 ~ 1326628 (+) True G934193
TU1065127 lncRNA upstream 64781 1317633 ~ 1324592 (+) False G934194
TU1065123 lncRNA upstream 64781 1318164 ~ 1324592 (+) True G934194
TU1065092 lncRNA upstream 89276 1299741 ~ 1300097 (+) True G934166
TU1065189 lncRNA downstream 7295 1486923 ~ 1489972 (+) True G934254
TU1065193 lncRNA downstream 11466 1491094 ~ 1496014 (+) True G934256
TU1065367 lncRNA downstream 126500 1606128 ~ 1606418 (+) True G934395
TU1065368 lncRNA downstream 127489 1607117 ~ 1607345 (+) True G934396
TU1065389 lncRNA downstream 142554 1622182 ~ 1622412 (+) True G934417
XM_021620025.2 mRNA upstream 25101 1352989 ~ 1364272 (+) True fam162a
XM_036934648.1 mRNA upstream 529842 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 529842 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 529842 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 529842 829488 ~ 859531 (+) True LOC110535150
XM_021620030.2 mRNA downstream 363536 1843164 ~ 1855569 (+) False LOC110535167
XM_036934658.1 mRNA downstream 897073 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 939711 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 939718 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 939718 2419346 ~ 2530974 (+) False plod2
TU1065095 other upstream 81614 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 437789 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 661168 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 785204 596323 ~ 604169 (+) True LOC110536523
TU1064300 other upstream 826714 562014 ~ 562659 (+) True G933532
TU1065194 other downstream 8448 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 346999 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 429032 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 2070411 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2501143 3980771 ~ 3981151 (+) True G935976

Expression Profile