RNA id: XM_036934658.1


Basic Information

Item Value
RNA id XM_036934658.1
length 1587
RNA type mRNA
GC content 0.44
exon number 7
gene id si:ch73-206p6.1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2376701 ~ 2387592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTACCATTGGCTGATGCGGGTGGGAAAGGCATCTATATTCTCCAATGAGATTAAAGGTTTTATTCTGAGCTCGTGAAGCGGACTGTCATATTTTTCTTCCAGAATATATGGTTGAATAGCAGCTTGACCTGCTCCCAttaagatgaacacgtaccaggTCCCGAACCCTGGCCTGCCGGGATGCCCACCCGGACTAGAGTATCTAACACAGGTTGATCAGCTACTCATCAAACAGAAAGTCGAGTTTATTGAAGCCCTGGCTGGCTTTGAGAGCAACAACAAGTATGAGGTACGTAATGCCATGGGTCAGAACGTGTTCTATGCTGTGGAGGAGAATGACTGTCTTAGCAGGCAGTGCTGCGGACCCTTACGATCCTTCACAATAAAAGTCCTTGACAACTTTGGACAGGAGGTCATCACAGTCACCAGACCTCTCAAGTGCATGTCCTGTTTCTTCCCCTGCTGTCTGCAAGAGCTGGAGGTGCAGGCCCCCCCAGGGAACACGGTAGGCTACGTGGTCCAGCAGTGGCACCCCTTCTCCCCCAAGTTCATCATAGAGAAtgaacacagagaggctgtgcTGAGGCTGCATGGACCCTTCTGTGGTTGGAGTTGCTTGCCTGATGTTGACTTTGAGATCGTGACCATGGATGAAGTGGATAAGATAGGGAAGATCAGTAAACAGTGGACCGGTCTACTCCGTGAGGCGTTCACGGACGCTGATAACTTTGGGATCCAGTTCCCCATGGATCTGGACGTGAAGATGAAGGCTGTGATGATAGGAGCTTGTTTCCTCGTCGATTTCATGTTCTTTGAGAGCGGTAACCAACCCTAGCAGCTGAGGAGTAGTCTACATCTCAGACAGTCTGCACTCCTGGAGCTATAACTTCCTGCTGGTTCATGGACAAGGTCTCAGATAGACATGGTGCTATGTGTGGGATTCATCTGGTTGGCATGGTAAGAACCATATAAATAGATCTACCAAGGGATTACAGGTGAATGTAATGTAATGGCCGCTGGTACTAGTTTTAGCTTCTGGGGTTGGTACACATTGCAGCTAAATCAGtcaaaccaggtgtgtgtgtgtcagtgttataTATTTAGAGATTGTATATAAAGGAGTGTTCATATGTGTGTTTTTACAGTGTGTACATTGTGGTTGCGTTGCCCACAACCCCCTCAGTCTGATAAAAAGGGTTGTGTGGTACCACTTCACCCATTTACCACATGTGAAAATAAAATGAACACCATCTTTATCTCAACCACTATGCTGAAGGGAAAggaaggagagcagagatgaagaAATGCTATGTAGCTTAAAGAAGAAATCTACAAAAAACATGTTATATTTTTTGGTAAATCGGAAGACCTTAATATGTTCTTGTGTCAACAGTATATTAAGTTACCGTATTACTGCTACTGTGTTTTGCTCGAGACAACTTTTGTATGCAGTATTTTGAGACTTTtgatatttaatttatttatttgtgtatttATGTAGCTtaatattgtttattgttttcatGTGATTGTAATTTGTGGGAAAGTTGACATAATGTTCAGTATTAAAAACATCCTCCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1066199 lncRNA upstream 19049 2354174 ~ 2357652 (+) True G935040
TU1066173 lncRNA upstream 40917 2332057 ~ 2335784 (+) True G935021
TU1066171 lncRNA upstream 41625 2328025 ~ 2335076 (+) False G935021
TU1066179 lncRNA upstream 42436 2329109 ~ 2334265 (+) False G935021
TU1066175 lncRNA upstream 42436 2329583 ~ 2334265 (+) False G935021
TU1066241 lncRNA downstream 62806 2450398 ~ 2450646 (+) True G935078
TU1066250 lncRNA downstream 81207 2468799 ~ 2470419 (+) True G935087
TU1066252 lncRNA downstream 83015 2470607 ~ 2471456 (+) True G935089
TU1066262 lncRNA downstream 126148 2513740 ~ 2514425 (+) True G935099
TU1066214 lncRNA downstream 142613 2530205 ~ 2530949 (+) True plod2
XM_021620030.2 mRNA upstream 521132 1843164 ~ 1855569 (+) False LOC110535167
XM_036934654.1 mRNA upstream 897073 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA upstream 897073 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA upstream 897073 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA upstream 897073 1425495 ~ 1479628 (+) True nktr
XM_036934660.1 mRNA downstream 31747 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 31754 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 31754 2419346 ~ 2530974 (+) False plod2
XR_005034533.1 mRNA downstream 860234 3247826 ~ 3249391 (+) False LOC118937290
XR_005034785.1 mRNA downstream 1014460 3402052 ~ 3402867 (+) True LOC118937434
TU1065679 other upstream 467621 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 549335 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 880687 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 1068942 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1425117 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1162447 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1593179 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1594259 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2632313 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2632568 5020160 ~ 5028145 (+) True G937051

Expression Profile