RNA id: XM_036934668.1


Basic Information

Item Value
RNA id XM_036934668.1
length 3023
RNA type mRNA
GC content 0.51
exon number 16
gene id stau2
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 3683874 ~ 3961133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTACTGTGTGCATAAATCACATTTTCGGTGTCGAATATAATCCGTTTTTTCCTGGAATTGTGATGTGGTCTGTTCCTAAATCCATCAGTTCTCTTTAGTGTTTGCCAATGTTGGAGGTGTAACTGGGGTCTGGCCCTGGACAAAGGTATAGAGCATGGCTCAAGTGAAAGTGCAGACCTCAACGCCCCTGGCTGGCCCTGGcttctcccccctgtctcccctcggGGCCATGCCCAGTCCAGGACCCTTGGGTCTACAGCCCTCAGTCAATGGCCCTGGGCCCACCCCCGGCTGCCTCGCTCCCTcagccgggtatgggcccgacacCCCTGTGTCTGCCAACTCACCAGAACAATGTAACAACTCGTCTGGTCCAGGCCCACCCCAGGAGAACATGGCAAACCCTAAAGAGAAAACTCCCATGTGTCTGGTGAATGAGTTAGCCCGTTTCAACAGGATCCAACCGCAGTACAAGCTGCTCAACGAGAGAGGCCCTGCACACGCTAAGATCTTTACAGTGCAGCTGTGTCTGGAGGAGCAGGTGTGGGAGGCGGAGGGCACCAGCATCAAGAAGGCTCAGCACTCCACCGCCTGCCTTGCCCTCACTGAGAGCCTTCTGCCCAGGCCCGCTCCTCGCTCTCCTACAATGGACGTCAACAGCAACCCAGgtAGTATCACCCCTACGGTGGAGCTGAATGGTCTGGCTATGAAGAGAGGTGAGCCAGCCATCTACCGTCCCCTGGACCCCAAGCCCATGCCCAACTACAGAGCCAACTATAACTTCAGAGGCATGTTCAACCAGAGGTACCACTACCCAGTTCCAAAGATCTTCTATGTCCAGTTGTCTGTGGGCACTAATGAGTTTATTGGAGAGGGCCGGACTCGCCAGGCAGCCCGTCACAACGCCGCCACGAAGGCCCTGCAAGCCCTCCGCAATGAACCCATACCTGAACGACCACCTCAGAGCCCTGAGGAGCAGAAGGAGCTGGATGAGGGGAGTGATGCCTCTAAGTCAGAAATCAGTCTGGTTTACGAGATAGCCCTCAAGaggaacctgtctgtctgcttcgaGgTCTTGAAGGAAAGCGGCCCCCCTCACATGAAGAGCTTCCTGACCCGTGTGTCAGTGGGAGAGTTCTCAGCAGAGGGCGAGGGGAACAGTAAGAAGCTGTCTAAGAAGAGGGCTGCTCTCTCCATTCTCCAGGACCTCAAGAAACTCCCCTTCACCCCGTTAGTGGAGAAACCCAAACTACACTACAAGAAACGCCCCAAGACCATCCTCAAGACAGGTCCTGATTATGGCCAGGGGATGAACCCCATCAGTAGACTGGCTCAGATACAGCAGGCCAAGAAGGAGAAGGAACCGGAATACCTCTTGCTGTCTGAGAGAGGAATCCCCCGACGCAGGGAGTTCATCATGCAGGTGAAGGTGTGTGGCGAGGTAGCCACGGGAACAGGGCCAAATAAGAAGGTGGCGAAGCGGAATGCTGCCGAGGCCATGCTACTGCAGCTGGGATACAAGGCCTCCACCTGCCCACAGAGCCCTACTGagATGGACGACAAAGGCTGGAACGGACAAAAGACGGCTTTTAACGAAACTACGACTAACAccCAGAAGGGTCTACTCCACCTCTCCCCGGACGTCTATCAAGAGATGGAGGCGAGCAGGAAACAGGGGGCCCCTGTTAACTACCTAACCCCCAAACTATCTGATCCCCTGGTCGTCCCTCTGTCCCCTGGACACACCCCCTACTACAGCCCCCCCGCAGTTGCCACGGCAGCCATGGCGAGGGAGCTGTTGATGAACGGGTCAGGAGAGGGGAGGTCTGGGGAGAACATAGGACTGAAGGGGAAGAGCTCTGTCCAGCCCTCACAGCAACTAGAGTACCTGGCTCAAATACAAGGCTTCCAGGTGCTGTACAGCGATGGTCAGAATGGTAGAGAGTTCATGACCTACCTGACACTCTCACCTGTACAGATGACTTTCCACGGCATCGGGAGCTCCATCGAAGCCAGCCACGACCAGgCTGCTCTAAGTGCCTTGAAACAGCTGTCGGAACAGGGACTGGACACGGTGGACTGCCCTATCAAGAGCAGCGAGGTGTGTGTCAGAGAGGACGGACACTGAACAGACTAACTCAGGCACCACCCACCACTCAGGTCGCCGTGGATACAACAGGCTGTCGTCAAGGAGTTGACCCCTGACTCTTTCCCCAGTCACCTATGacccctatcccccccccccccccccccccacgaccGCCGCAGCATCCTGGCAACAACCTGGAACAACATACAACGGAGTGTGTGGATGTGTACCgtgaagagagaaaaaaaaaaaaatgaaataaccgACTAACTAGAAAAAGATGGGGAAAAACCTATGAGTCTCTATGTGAAGACAACACTATTCTAACACATTACATGTATTGATCATTTACCAggaatttaaatttaaaaaataaatacaaatatatatataataatttaaaaaaaaatagattgAGTATAAACACCTAGATTTTCCCTGTTGGATAGATGTGGAATGATATGGGTCAAACCCCCAATACAGTTGGATAGATGTGTAATGATATGGGTCGAAACCCCCAATACAGTTGGATAGATGTGTAATGATATGGGTCGAAACCCCCAATACAGTTGGATAGATGTGTAATGATATGGGTCGAAACCCCCAATACAGTTGGATAGATGTGTAATGATATGGGTCGAAACCCCCAATACAGTTGGATAGATGTGTAATGATATGGGTCGAAACCCAATATGTATATCATGCCATGAAGACAGAGGCAACATTATAGGGGGACAAAGTTGTGTAGCTTATTTTCCAAAGGGGGTAATTATGTTTCTGTTTATTTTCTAGTTTATTCATCTAACAATGCTTGAGTACTGACTGTATTATAAAATTAGCCAATAGCAGTGCTGTGAAAGTTGTAGCAGTTGTCTTCTCATACAGTAATATTCACCCAGCTTATCTTTCATGCTGATATTAATAAAATCaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067234 lncRNA upstream 20796 3662319 ~ 3663078 (+) True G935887
TU1067189 lncRNA upstream 127088 3556446 ~ 3556786 (+) True G935849
TU1067168 lncRNA upstream 144289 3535009 ~ 3539585 (+) True G935840
TU1067165 lncRNA upstream 152985 3529737 ~ 3530889 (+) True G935838
TU1067155 lncRNA upstream 166345 3516595 ~ 3517529 (+) True G935829
TU1067334 lncRNA downstream 6692 3965807 ~ 3966270 (+) True G935968
TU1067336 lncRNA downstream 12175 3971290 ~ 3971863 (+) True G935970
TU1067338 lncRNA downstream 14146 3973261 ~ 3973492 (+) True G935972
TU1067340 lncRNA downstream 15108 3974223 ~ 3974504 (+) True G935974
TU1067341 lncRNA downstream 16505 3975620 ~ 3975909 (+) True G935975
XM_021620038.2 mRNA upstream 7408 3652795 ~ 3676466 (+) True flj11011l
XM_021620039.2 mRNA upstream 46988 3633940 ~ 3636886 (+) True LOC110535177
XM_021620035.2 mRNA upstream 67562 3523557 ~ 3616312 (+) False jph1a
XM_036934667.1 mRNA upstream 67562 3523557 ~ 3616312 (+) True jph1a
XR_005034785.1 mRNA upstream 281007 3402052 ~ 3402867 (+) True LOC118937434
XM_036934672.1 mRNA downstream 59077 4018192 ~ 4024376 (+) True LOC110536525
XR_005034816.1 mRNA downstream 60699 4019814 ~ 4019908 (+) True LOC118937477
XR_005034817.1 mRNA downstream 61365 4020480 ~ 4020575 (+) True LOC118937478
XR_005034818.1 mRNA downstream 62125 4021240 ~ 4021332 (+) True LOC118937479
XR_005034819.1 mRNA downstream 64482 4023597 ~ 4023692 (+) True LOC118937480
TU1067186 other upstream 133387 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 1774794 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 1856508 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 2187860 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 2376115 1307527 ~ 1307759 (+) True G934169
TU1067342 other downstream 21656 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 22736 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 1060790 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 1061045 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 1184202 5143317 ~ 5144565 (+) True G937096

Expression Profile