RNA id: XM_036934675.1


Basic Information

Item Value
RNA id XM_036934675.1
length 4477
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC110536527
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4491768 ~ 4568591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaggctgtttaggttttcacggtacgtttattgttttgttcgtgTTTTATCtttcattaaacatgtatcataataaccacgctgcattttggtccgatcttcagaggaagaggagaaagtaAACCGTAACATACCCCTTTAAATGTTTTCCCCCCTTTTTGTCCACagtgtccacagtgtccctatcgtctagtttgaacagttctgtaaaaaacattgcatccagagtgcatcaaacatgatttagatttttcgCCCCACATTTTTGtcacagtctgaatttaaaatggattagaCTACACTTTGTTTTGTCCGATAACGATTGACATGACGTCAAAGTGGAATCATCTATCAATATTTtgactattttatttttttaactatgAAAAGCTGaagtgtcttgagtcaataagtattcaacctctttgttacgTGATTGGACTGTGAGACCTCATGCAGCTCACCAAGGAAGTGGCACCTCAGAACGGTTCCTATAAGTGCGTGATCGACGATGACGAAAGAAGATCTCACCAACTCTCTGTAAAAACAGACATCACTCTGGAGTCCGTAAACCTGTTTGAGTGGGCTCGGGGAGGTGATGTGTCCCAGCTGGAGGGCTTGGTGAGGAGGAACCCAGGAGTACTGAGGGAACAGGATGACTCTGGTGCCTCTCTGGTCCACCACGCTGCTGGTGCAGGAAACACCCCTGTTATCAGGTTAATCTGCAGCATCACAGTCAGAGATGggTGGAAGGTGTATGATGACGAGGGGTCTATGCCGCTGCACTGGGCCGTGGAGAGGAACCAGCCAGACAGCTGCAGGGCTCTGTTAGAGCTGGGGGCTGAACCTAACGTCCTCAACAAGGCCCTGATGTCACCTCTACACCTGGCTGTtagccacacacacaaccatctgGTCCAGCTCCTGTTGTCTCACTATAAGACAGAGTCTAACCTAGAAGGAGGTCTTGGCAACACTCCAGTCATGTTAGCCTGCTCCATCAACAATACTGAGGCGCTCTCTATACTGCTGAGCCATGGGGCGCGGCTCTCCAGTCAGAACAAACTGGGCCAGTATGCTATCCATGCAGCTGCCTTCGCAGGCTCAAAGAAAGCCATGGATGTCATCCTCAAGGCTGGAGAGGAGATGGGTCATTCCATAGAGGAACACATTAATTTCCTGGATAAGTCATACAGTAGTCCACTTCACCTGGCGGTCAGGGGAGGCAACATGGACATCATCGAGTTCTGCATCCACAAAGGAGCCAAGATCGACCAACAACAGGTGGACCGGTCCACAGCTCTACATTTTGCCTGTTCCCAGGGAGCTACAGAGGCAGTTAAACTGATGCTGTCCTCCTACAGCAGACTGGACAGCATCATTAACCTGCCTGATGGAGCCTGCCAGACACCTCTACACAGGGCAACTATATTTGATCACACAGAATTGGCGGAGTACCTCATTTCAAAGGGTGCAGACATTGACTACATTGACAGTAAGGGTCTTTCCCCCTTGCTGCTGGCTACTAACTGTGGAGCCTGGAGAACTGTGGCTCTTCTGCTGTCCAAAGgtGCCAACGTGAACATAAAGGACCAATCAGGATGTAACTTCCTCCACCTGGCCATCCTGCAACCCAAAGGCCTCAAAAATCTCTCCGGGGACGTCTTGCAGCACAGCAGTGTGAAGGATCTGTTGAGTAACGAGGACAACGAGGGCTGTACTCCTCTCCACTACGCCTGCAGACTGGGCATCCACGAATCGGTCAAGAACATCCTGGTTCTACAGGTCTCTCTGGACCGCAAGTCCAAGGACAAGAAGTCAGCCCTGCACTTCGCTGCCCAGTATGGTCGTGTCAACACCTGCCAGCGTCTACTGGAGACCATCACAGACTCCCGTCTGCTGAACGAGGGGGACGAGAGAGGCCTGACCCCCCTACACCTGGCCTCTGGAGGGGGACACACCAAAGTGGTGGAGCTGCTGCTTCGTAAAGGAGCCCTGTTTCACTGTGATTACAAAGGGAGGACCTGTTTGCACCATGCAGCGGCAGAGGGGTACACCCAGACCATGAAGATCGTCCTGGCCACCAACATCAAACTACTGGACAAGCTGGATGAGGATGGGAGCACTGCGCTGCACTTGGCAGCCCGGGAGGGTCACGTAGCAGCGGTGAGACTGCTTCTCCAGAGAGGGGCGGAGATCAGCCTCAACAAGAACCACGCCTCCTTCTTCCACGAAGCACTGCAACATGGGAGGAAGGATGTGATTAACGCCATCATCGACAGTGACAGATGTACTCACATCCTGAGTATGTTCAAACGTGATGCTGGCCGTCGTTGTCCAGTGTTGGACCTGGTTGACTTGCTGCCAGAGTCTTGCAAGTACCTTCTGGATCGCTGCATTAGAGAATCAGACGACGATACCAGAAGTCCTGACTACCATATCGACTACAATTTCCAGTGGCTTCAGGCTCCAATAGCACTGACGAAGCACGCAAAGGTAGACAAAGGCCTGAAGATCCAGCCTCTGGCCACTCTGAATgcCATGGTGAAATACAACCGCATAGAGCTCCTCTCACACCCCGTCTGCAAGAAATACCTGGAGATGAAGTGGGTGGCCTACGGGAGCGCTGCCCACCTTCTGAACCTGTTCGTGTACCTGCTGGGTCTGCTTCCTCTCACCCACCTCATAGTGAGCCTGAGACCCAGCCTGGACTACACCAGCCCTGACAACACCACAGCTGTCACCATGGTGCCCATTTCCTTCAGAGAGCAAGGTTCCTTCCTGTCCGGCTGCATGGTGATGGTGCTGGTGAtgaacatttattccatggggaAGGAAGTGACGCAGATGTACCACCAGCGTTTGAGTTACTTCAAGGATCCCTTTAACTATCAGGACTGGACCGTGGccatcttctctcttctcttcgtCATCCCCCTGAATTTCAACGTTGAGGGGTCTTGGTACTGGCAGGCTGGGGCGATGGCAGTCTTTCAATCCTGGATTAGCTTCCTATTCTATCTGCAAAGGTTTGAGCACTTTGGGATTTACGTGGTGATGTTTAACGAGATTGCGAAGACATTGTGGAAAATCCTACTGCTTTTCTTCTTTCTGATGCTGGCGTTTGCCTTGGTCTTCCATGCCCTCATGCTCAATCAGAAAGAGTTTGAGCGACTGGACCTGTCTGGGGTCCAGATCTTTGTGATGATGGTTGGAGAACTGAATTACCAAAGCAACATTCTGGACATATACCTAGACAACAAACTTCCATTTCCCTTCCTCACTTTCTACATGTTTGTGGTGTTTGTCATCCTCATGCCGATCCTGCTGATGAACATGATGATCGGTTTGGCAGTCGGAGACATCGCTGAGGTAAAGAGAACCGCAGGTCTGAAGAGAATAGCCATGCAGATCGAGCTCCACACCAATCTGGAGGAGAAGATGCCGTACTGGTTGTTGAAGAGAGTAGACCAGTCATTCTTCACCATCTACCCCAACCGCAAGTGCTCCAAGGCCTCAATACTTAATTTCTGGAGTCAAGGAGAAGCAAACGAAGTGCAGACTCGTCTAATGACCAACTCATCAAATTCAACCTCTGTCGAGGCTGAACTACGCAGACAGAAGTACAgACTGAAGGAGATATCCAGTGTGCTGGAGAAGCAGCACGACCTGATGAAGCTGATGATCCAGAAGATGGAGATCACATCGGAGGCAGACGAACATGACGGGCCCACAGAGGTCAAAGGTTACAGGCAGAGGTCAAACTGGGGCCAAGCCAAGGGCTCCAACTGGATCCCGCTGATGAAGGTCCTCGAGCGCAAGAACGTTTGAGTCCTTCAATTTACTGGTGACtaagggttgcaaaattccattTTGTCGGGTTTTCCAGGAATCCTGGGTGGAAGATCCCTGGGATCAGAAGGAAATAAACAAAAGATCCAGAAACCTCCAACCAGGATTTGTGAAAACCAGGGAAATATTTAGGAAAGACCAGAATTGTAAATCCTCATTCATGACCATCAACAATATGATAagaatatttaaaatatataagaTTTTCATTTTTATATATACAATACTTGAACTGATATTGTTTTAAAAATTTACTGTAGGATACTATGATTAGCATGAATGACTTCATCATTGGGGATACTATTTCTGATGCACTTTTGATTGGTTAAttatggatctctctctctctctctctctctctctctgcaaacaCTATACTTGTATTTCTCAATGTGTTCATAGATTATTGTGTGCACGTAATAATAATTGCATGTGATTGAAATGATTTGAATAGTGTATGTATATTTTATAACCTGTCTGAAACATACTGGAACTGAATGGTTGTATTTTGGGTGGAACCATTAAAAATTGTCAAATCGTCCCCATACATTGTGctcatgcctctccctaatatcaatatgacttgtccattactgtcctggttagtgattactgtcttattt

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0050968 detection of chemical stimulus involved in sensory perception of pain biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068248 lncRNA upstream 16837 4478190 ~ 4478461 (+) True G936664
TU1068228 lncRNA upstream 43337 4451743 ~ 4451961 (+) True G936645
TU1068227 lncRNA upstream 45716 4449296 ~ 4449582 (+) True G936644
TU1068226 lncRNA upstream 46522 4448247 ~ 4448776 (+) True G936643
TU1068219 lncRNA upstream 50268 4444809 ~ 4445030 (+) True G936636
TU1068302 lncRNA downstream 7583 4576174 ~ 4576970 (+) True G936703
TU1068404 lncRNA downstream 80252 4648843 ~ 4649049 (+) True G936786
TU1068405 lncRNA downstream 81577 4650168 ~ 4650382 (+) True G936787
TU1068413 lncRNA downstream 96043 4664634 ~ 4665777 (+) True G936795
TU1068426 lncRNA downstream 126905 4695496 ~ 4696588 (+) True G936805
XM_036936631.1 mRNA upstream 377895 4109412 ~ 4117403 (+) True LOC118937460
XR_005034819.1 mRNA upstream 471606 4023597 ~ 4023692 (+) True LOC118937480
XR_005034818.1 mRNA upstream 473966 4021240 ~ 4021332 (+) True LOC118937479
XR_005034817.1 mRNA upstream 474723 4020480 ~ 4020575 (+) True LOC118937478
XR_005034816.1 mRNA upstream 475390 4019814 ~ 4019908 (+) True LOC118937477
XM_036936609.1 mRNA downstream 15025 4583616 ~ 4586582 (+) True LOC118937435
XM_036934676.1 mRNA downstream 251154 4819745 ~ 4956185 (+) False eya1
XM_036934677.1 mRNA downstream 251154 4819745 ~ 4956185 (+) False eya1
XM_036934678.1 mRNA downstream 251154 4819745 ~ 4956185 (+) False eya1
XM_036934679.1 mRNA downstream 251154 4819745 ~ 4956185 (+) False eya1
TU1067343 other upstream 513100 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 514147 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 944811 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2586218 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2667932 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 451314 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 451569 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 574726 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 936113 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1552993 6121584 ~ 6122269 (+) False G937889

Expression Profile