RNA id: XM_036934676.1


Basic Information

Item Value
RNA id XM_036934676.1
length 2388
RNA type mRNA
GC content 0.52
exon number 18
gene id eya1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4819745 ~ 4956185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACACTCTGTAGTCACTGCCTGAAGCAGTAATCAGACAACTGTCCTTCTCACTCTGACTCGGTCTCCTGAGATaccagttagtgtgtgtgtatcggGACTCCATGAGTTCTAACGCTTAAAATGAAAAAGAAAAAGTTGTCTTGTAGCCGGTAATTTGTTGCGTTACAGATTCTaccaactctttttttttttaagaacttCATTTTGCATTTCTTCTTGTTTGTTCTGGACTGGACAGACTTGGCTGTAGAATAGTATAACGAAGTTTTAAGGAACGGTTGCCAGATAAAGGAATTTTCTCCAATATTGGGGTCTATGGACATGCAGGATCTAGCCAGTCCTCACAGCCGTGAATCCCCTAATGGTCCCAGCCTCGACAACTCCCATATCAATACCAATTCCATGACCCCCAATGGTACTGAAGGTGATAACATCACAATGCTCACCACAGCTGACTGGTTGTTAAGCACTAGCTCACAGTCGGCTGCAGGTCGGTGCAGTTCAGAACCAATAATCAGCAGTGACATCACCACCCCAGTAGCCGACGCCTCCCTAGACAGCTTCTCAGGATCAGttattGGAACCAGTGGCTTCAGCCCAAGACAAACACACCAGTTCTCCTCACAGATTTATCCTTCCAACAGACCGTATCCACATATTCTCCCTACTCCTCCATCCCAAAATATGTCTGCGTATGGTCAGACACAGTACACCACAGGAATGCAGCAGGCAGCAGCCTATGCTAGCTACCCCCAGCCTGGACAACCCTACGGGATACCTGCCTATGGTCCATTATGGGCAGGTATAAAGACAGAGGGGGGACTGAGCCAGTCCCAATCCCCGGGACAGACAGGCTTCCTCAGCTACAGCTCTGGTTTCAGCACACCTCAGACGGGCCAGGCTCCATACAGCTATCAGAtgccaggTGGCACGTTCACAACCACGTCAGGACTGTACACAGGAAGCAACGCCCTCACAAACTCAACCGGCTTCAACAGTACACAGCAGgaCTACCCGAGCTACCCAGCGTTCGGCCAGGGCCAGTACGCCCAGTATTACAACAGTTCTCCCTACACCTCCCCCTATATGACCAGCAACAACACCAGTCCCACCACCCCCTCCACCACAGCCACCTACACCCTCCAGGAGCCCCCCAGCGCCCTGACCAGCCAGGCCCTCACGGACCCGCCAGCAGGTAGGCCCCAGGCCCCCCAGGCCACCCACCCTCCATCCCCAGGATCAGACGGCTCTGGAGGTGGTGGCTATGATGCCAGGGCCACTCATTATGTCGAGTACAGTACCATCCACAGTCCTTCAACGCCCATTAAAGATTCAGAATCGGATCGATTGCGACGTGCCTCGGATGGAAAGTCACGTGGCCGAGGGAGAAGGAACAACAACCCTTCACCACCGCCTGACTCTGACCTTGAGcGAGTGTTCATCTGGGACCTGGATGAGACCATCATCGTTTTCCATTCCTTGCTCACAGGGTCTTACGCTAACAGATACGGCCGGGATCCCCCGACGTCTGTGTCACTGGGACTGAGGATGGAGGAGATGATCTTTAACTTGGCAGACTCTCACTTATTCTTCAACGACTTGGAGGAGTGTGACCAGGTTCACATCGATGACGTCTCATCTGATGACAACGGTCAGGATCTGAGTACATATAACTTTGGTTCAGATGGGTTCCACGCGGCAGCGACCAGTGCCAACCTGTGCCTGGCCACGGGCGTGAGAGGAGGGGTGGACTGGATGAGAAAACTGGCCTTCCGCTACAGACGAGTAAAAGAAATCTACACCACCTACAAAAATAACGTTGGAGgtctGCTGGGCCCAGCCAAACGAGAAGCCTGGTTACAATTGAGAGCAGAAATTGAAGCTTTGACTGACTCCTGGTTAACACTGGCACTGAAAGCACTCACATTAATCCACTCAAGGTCAAACTGTGTGAATATCCTGGTGACCACCACCCAGCTCATACCTGCCCTGGCTAAAGTCCTGCTCTACGGACTGGGGATAGTGTTTCCTATTGACAATATTTATAGTGCTACCAAAATTGggAAGGAGAGCTGTTTTGAGAGGGTAATTCAGAGATTCGGGAGGAAAGTTGTTTACGTTGTCGTGGGTGACGGAGTGGAAGAGGAGCAAGGCTCAAAAAAGCACAACATGCCGTTCTGGAGAATCTCCAGCCACTCTGACCTCATGGCCCTCCACCATGCTCTGGACCTAGAGTACTTGTAGCTACGGCCTGGCACTACACCGCCCAGCCCCGAAACTGGCCCCTACCGGCCACTACACCTACTGGCCCCTACCGGTCTCTACATCAACCTGCTGGCCCCTACCGGCCCCTACATCAACCTACTGGCCCCTACATCAACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068538 lncRNA upstream 9657 4809778 ~ 4810088 (+) True G936905
TU1068501 lncRNA upstream 27133 4790706 ~ 4792612 (+) True G936876
TU1068492 lncRNA upstream 43681 4773163 ~ 4776064 (+) True G936869
TU1068493 lncRNA upstream 45914 4773583 ~ 4773831 (+) True G936870
TU1068487 lncRNA upstream 52475 4766944 ~ 4767270 (+) True G936864
TU1068711 lncRNA downstream 47783 5003968 ~ 5004666 (+) True G937038
TU1068749 lncRNA downstream 124879 5081064 ~ 5085992 (+) True G937071
TU1068762 lncRNA downstream 181815 5138000 ~ 5187878 (+) False G937082
TU1068764 lncRNA downstream 182964 5139149 ~ 5187878 (+) False G937082
TU1068787 lncRNA downstream 192268 5148453 ~ 5153171 (+) True G937098
XM_036936609.1 mRNA upstream 233163 4583616 ~ 4586582 (+) True LOC118937435
XM_036934674.1 mRNA upstream 251154 4491768 ~ 4568591 (+) False LOC110536527
XM_036934675.1 mRNA upstream 251154 4495298 ~ 4568591 (+) True LOC110536527
XM_036936631.1 mRNA upstream 702342 4109412 ~ 4117403 (+) True LOC118937460
XR_005034819.1 mRNA upstream 796053 4023597 ~ 4023692 (+) True LOC118937480
XR_005034537.1 mRNA downstream 2859 4959044 ~ 4963664 (+) True LOC118937293
XM_036934610.1 mRNA downstream 212702 5168887 ~ 5184807 (+) False LOC100136147
XM_036934611.1 mRNA downstream 212705 5168890 ~ 5184807 (+) False LOC100136147
NM_001124437.1 mRNA downstream 212791 5168976 ~ 5184747 (+) True LOC100136147
XM_036934699.1 mRNA downstream 236996 5193181 ~ 5429446 (+) False LOC110536532
TU1067343 other upstream 837547 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 838594 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 1269258 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2910665 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2992379 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 63720 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 63975 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 187132 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 548519 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1165399 6121584 ~ 6122269 (+) False G937889