RNA id: TU1068806


Basic Information

Item Value
RNA id TU1068806
length 1970
lncRNA type read_through
GC content 0.41
exon number 2
gene id LOC110536532
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 5193181 ~ 5518848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACGGTGCTAGGAGCGCTAGTAGTCATATTCCCTCGTCCCAGTAATGGGGGATGGTGACATCATATTCCCTCGTCCCCGTAATGGGGGATGGTGACATCATATTCCCTCGTCCCTGTAACTGGTATAGTGGCTTTAGCTCCGTTGTTTGCATCAAAAGTCACATTCCGATCTCGAAACTACATCCTCTAATCCTGAAATGTTGTAGCCTGGTCCCGTATATTTGTGTTCTTGCTTACTCCGTTGCTGCCAATGTCAACTCTATGTTGTCATGACAATtagtgacaaggagttggcatgatggcacaaacagactggcgcCCATGCTAACAATGTTGATATTTCTGATGTTAAGCCAGACATTACTATGGACAACAAGCCAAATATCCCATGCCTTGTAAATTGGGTTATGAATTCTACCAGCCTTTCATTACAAAATGAAGGACAGAGGTGGACTTAGCTGTGTTTCATCAGTTTTAAATTAAACTGGCCCCCAAACTGTTACATCTGCCTCGGATAAAAAGCCTATTAGCAGCCCAGACAGTGTGATAATAGTCCATCAGCCTCAGAGAAGCATGCAACGCcatctcgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagcataATACATGTATTTGATGAGGGTCTGAGATAAATTGAATGTATTGTCATTGGCTGAGCTCAGATCAGAAGAGGCTGTAAAAGTGTTGCGCTGCACCTCAAAATATATCCTGTTCCCTATGGGCCTCGGGTCACAAGTTGTGCTCCATATATGTAATGACGCCCCTTTTGAGATGCAGCCTATCACTGGGAGAAGCTGTAGAATATCGTTCTCATTGGATGATCTAGAACTGCCCAAAACCTGATGGATTAAATTACTTATAAGCCCTGGTCTGAGAACAGTGTTGATTTGTACTTCCCTAATGGTAACTGCTAGGATTGGCATGGAGAGAAAGCTGATCAAGGACAGTCAAAGTaagagtgttgatctaggatcagtttagtctTTACATTACAATGAATGGACAAAGGGGAACTGATGATAGATCAGTATTTCTACGCTCAAATGATTTGGGGAATAATGTACTTTATCCTAGCATTTCCTTTGGACACTGAGGTACAGTAGCATTTTGGAGCATAGGGATGCTATAATTTAGTGATTCCATATGTAACACTATGGTATGGGGCTCTGTCTCTCGGAGAAGGGCGCATTCACATTGTTTTGGTGTACGATTTATCACAATTTATCGATCACACTTTTGATTAAGCTGGatgtcaaaacaaatcaaatcaaaccccCGTTTGCAAATTTCCAAAGATTTGTTAAGATTTTTAAATGAATACAAGCCATGAggtaatgcatttttttttaagcATTTGTGTCAGTACTTGGAGCAAACAAACTATTTGccccacacaacaacaaaaaaaatgatcaTACAGACTTTGAATTTAAAACAATTTACGAAATAATTCCTCTATTTAACTTacattttttagaattttttttttatatgtccTGTTTTTGTATAGTCAGCTAATTTTTCTTAGCGCTAAAATGCAAGAACCTTAATGCTAATAATCTAGCATATTGCCTTAGATTGTCTGTTCTCGTTCTTGTATATTATAAAGCTGTATTATATTTGTATTGTGATAATGTACATTATTAAAAGGGTGATAAATCAATGCTCAACACATCTTAGTTGGTGGTGATGAGACTcacagtagtctctctctctctctctctctctctctctctccctctctctctctctctctctctctctctctctatctctctctctctctctctctctctctctctctctctctcttcctctctctctctctctctctcttcctctctctctctctctctctctctctctgcctctctctctctctctctctctccctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068892 lncRNA upstream 76419 5350463 ~ 5350802 (+) True G937197
TU1068885 lncRNA upstream 119158 5307079 ~ 5308063 (+) True G937190
TU1068876 lncRNA upstream 120257 5298239 ~ 5306964 (+) True G937182
TU1068765 lncRNA upstream 239343 5186165 ~ 5187878 (+) False G937082
TU1068770 lncRNA upstream 239343 5186532 ~ 5187878 (+) True G937082
TU1069189 lncRNA downstream 27559 5546407 ~ 5547599 (+) True G937438
TU1069190 lncRNA downstream 30738 5549586 ~ 5550268 (+) True G937439
TU1069215 lncRNA downstream 73252 5592100 ~ 5593586 (+) True G937464
TU1069221 lncRNA downstream 82637 5601485 ~ 5616658 (+) True G937469
TU1069317 lncRNA downstream 159083 5677931 ~ 5690813 (+) True G937561
XM_036934610.1 mRNA upstream 242414 5168887 ~ 5184807 (+) False LOC100136147
XM_036934611.1 mRNA upstream 242414 5168890 ~ 5184807 (+) False LOC100136147
NM_001124437.1 mRNA upstream 242474 5168976 ~ 5184747 (+) True LOC100136147
XR_005034537.1 mRNA upstream 463557 4959044 ~ 4963664 (+) True LOC118937293
XM_036934694.1 mRNA upstream 471036 4819745 ~ 4956185 (+) False eya1
XM_036934708.1 mRNA downstream 509812 6028660 ~ 6038322 (+) True LOC110535189
XM_036934707.1 mRNA downstream 522994 6041842 ~ 6098398 (+) False LOC110536599
XM_036934706.1 mRNA downstream 523008 6041856 ~ 6098398 (+) False LOC110536599
XM_021620046.2 mRNA downstream 608527 6127375 ~ 6139717 (+) False LOC110535186
XM_036934710.1 mRNA downstream 609414 6128262 ~ 6139717 (+) False LOC110535186
TU1068784 other upstream 282656 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 399076 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 405608 5019905 ~ 5021613 (+) False G937051
TU1067343 other upstream 1445023 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 1446070 3980771 ~ 3981151 (+) True G935976
TU1069683 other downstream 602736 6121584 ~ 6122269 (+) False G937889
TU1070683 other downstream 1500303 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 1502228 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 2055504 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 2301672 7820520 ~ 7823317 (+) True G939544

Expression Profile