RNA id: XM_036934712.1


Basic Information

Item Value
RNA id XM_036934712.1
length 2433
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110535186
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6127375 ~ 6139717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAGGGGTTGATGGTCCTTAAGCATGTAGAAGGTCAAGATAGGAGACGTGTAACATGGTGTTGGGATTTTAATGCTCATAGTATGCTCTCTGGGGAGAGGGTTATGGACTGAGGTAAATGGaAGGAAGCAAACAGCCACAGTCGATGGAGAACGATCAACACAACCAGCGGCAGGTCAATCACCCAAGGCCCTTCTTCTATGTTCAGCCGGCTTCTCAACCTTACTACAACATGTATCAGCATCATAATCAGTGGCAAAATATGAGCAACCCATATAACCACTATACCTTACCTGGTTCAGGAAGTTATCCTTTTGGACGTCCTAGTTCATACATGTCCCCATACCCATACATGCAGTATCCTGGTCAGTACATTGTTCCACACATGCATCCAGTTGATTACAGATGCATGTACGACCCACCTCGTTTCCACCCACCTCCGATGCATGACCCCATGTTCCGccaccagcaacaacaacaacaacaacaacaacaacaacactacagtGCTCAGGCCCAGAGAGAGGTGGCCTGCTCGGAGGCTCAGACCCAGTCCAGTGATGCTCTGAACAAGCTCCAGACCAACGAGAAGCAAGGCTCTGAGAAAGAACTTGATTCCGGAGTTGTTTCCCAAGCTTCTGGAATCTTCTCGTCAGAGAATAAGGAAGGGAAACGCGAGGTGGGGGGAGACATGCACAGTAGTCATGGAGCCTCGTATGCGGCGGTCTACGACGGCGATTCGAGTCGGAGCCTCGGAGACCTGGGGCTTCAGGAGGGCTGGGCTGTAGACTCTGACGAGGAGCTCCCATTGGACAGCTCATCTGTTCAGGAAGAGGATATCCAGGACACGCGGCATCACGCAGAGGATGAGTCTCTTCATAGCTGTTCTTCTGAGAATCTTTGCCTCCTGTCCGCCGTCTCGCAGTCCGACGACAGCCCCAGACCCGAAGACCCAGACAACCAGGCAGAGGAGGGGAGCGCCAATCCAGACACTGGTACTAGTTCCACTGAGGCACTTCTGAGGCCTCGGAGTCACTGCTCCAACCTGCTCTCCCCCCAGTCACGACCACCATCACCCTTAGCCTCTGACTGGCAACCCTTAGAGCAACATGGAGGAGAAACGTTTGATGTTCCAGATGGGAGTCTGTGTGAACTGGACGTTGACCTGTCCTACCAGATCCTCTGTCTGCCCTTTGACAAGGTGTTTACAGCAAGCGCTCTGCAGAAGGACGTCTCTACCAGCTCCAGCGTTGCTCTGCTGTGTGAAGACCTCCAGGCCTCTCTGTCGTCTTCTCTCGCTACTTCCTCCACCACCCCAGTccgtcaccaccaccactactactgccagCCACAGACGGCTCACGAGAGGCTCAGTGTCCTGTGTTCATCCCTGGACGAGCTCTCGTCCCGGGACGAGATGTTCTCCACCGATCTGGAGGACGTGGACGTGTTTCCCGGATGTTCAGTCTACGCGAGGGGGAGGTTCTCTGACGACCTCAGAGAGGCAGAGGTCAAGGAAGTCTGTCCCCAGTCCAAGAAGCTCATGTGCGTCTGTTGTGGCTCGAGCCTGCTGAAAGGAGGAGGGGTGAGCAGCAGGGTTAAAGTTCATCACAGCCCCAGGGTGTACGCCGCCGGGGACTCTGACGGGGTGGTCGAGCAGGAACAACGAGGATGTGTAAGGACTTGTGAGAGAGCGCACCCCAGTAGGGTGGTCGTGAAGAAGCACCCTGTCCACAAGAAACACCAGCCTCTCCCTCTACACATCCGACATGCTCCCAAGCACAGCTGTAAGAGAGGCCAGTGGAGAGAGGCTATTGGGCCCGAGGAGCAGGAACCAGAGACCGTGTTGGTGGGATCAGAGCTGAAGTATTATGAAGGCCatgtggtggagggggagagtggaCACGGAACTGGGGATAAGCAACACGGGACATATGGACTGTGCCGAGATGGCGTTAATACTTCAGATCCGGGCACATGGGAGAGTGGAGGTGCCAAGCCTAGACAGAAACCACACAGCTCACTGCCTCGACCAGAGAGACCAGCACTGAGGAAAGCTCTGTGTAAGCCGCTGGTATACCAGAGAGTCAGAGATGAGGAAAATGACGACGAGgtTCCACCAGGAGAGGAAACACAAGGGTTTGATATCACATCCTTGATGAAATCAAAGAAAATGTCACAAACAAAGAGCACTTAGTAAAATGCATAACCGAAAATGTTTCGGATGGACACCATTTTGTTTTTGTGATAAATAAAACCAAGGAGATAAAGCACTTCCAGGAGGTCCATAGACACTGTCAGTTGGCtagcactgtactgtatgttggtaaaAATGTCCCCTCGGTCAGCACAGGGTTTGGTGGCTTTGAAAATCAGATTTGAACTGTTGTGACCAGTGGATTATAAAAATTTATTTCATAACACACACTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069682 lncRNA upstream 5994 6121584 ~ 6122269 (+) False G937889
TU1069684 lncRNA upstream 5994 6121584 ~ 6122269 (+) False G937889
TU1069685 lncRNA upstream 5994 6121584 ~ 6122269 (+) True G937889
TU1069681 lncRNA upstream 6729 6121004 ~ 6121534 (+) True G937888
TU1069626 lncRNA upstream 14961 6109783 ~ 6113302 (+) True G937849
TU1069628 lncRNA downstream 8710 6148427 ~ 6148791 (+) True G937851
TU1069697 lncRNA downstream 27387 6167104 ~ 6167691 (+) True G937899
TU1069723 lncRNA downstream 81565 6221282 ~ 6222049 (+) True G937923
TU1069725 lncRNA downstream 85062 6224779 ~ 6225211 (+) True G937925
TU1069730 lncRNA downstream 95521 6235238 ~ 6236139 (+) True G937930
XM_036934707.1 mRNA upstream 29865 6041842 ~ 6098398 (+) False LOC110536599
XM_036934706.1 mRNA upstream 29865 6041856 ~ 6098398 (+) False LOC110536599
XM_036934708.1 mRNA upstream 89941 6028660 ~ 6038322 (+) True LOC110535189
XM_036934701.1 mRNA upstream 688904 5432326 ~ 5439359 (+) True LOC110535182
XM_036934700.1 mRNA upstream 698817 5193181 ~ 5429446 (+) False LOC110536532
XM_036934735.1 mRNA downstream 1998 6141715 ~ 6148083 (+) True LOC110535188
XM_036934733.1 mRNA downstream 113265 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA downstream 122632 6262349 ~ 6283758 (+) False LOC110535195
XM_036934734.1 mRNA downstream 122632 6262349 ~ 6283758 (+) False LOC110535195
XR_005034540.1 mRNA downstream 122632 6262349 ~ 6284707 (+) False LOC110535195
TU1069683 other upstream 5994 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 622934 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 983698 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1100118 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1106650 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 879434 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 881359 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1434635 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1680803 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 2000549 8140266 ~ 8140583 (+) True G939690

Expression Profile