RNA id: XM_036934734.1


Basic Information

Item Value
RNA id XM_036934734.1
length 2586
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110535195
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6252982 ~ 6498275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAACTCCCATAGCATGCAGTGCCTGTCACCTCTGTATTGTGCCTGTCACTTCTGTCGTTAAGTACAGAGAGGTCGTAGTCTCAAACAGGTAGATCGTTAAATGGTTTTGAAGAGTTCGCGAGCGTAATTCACACTTTTGGTGTCATGATGGAGATTGAGGATGGAAAACCATTGCACGAGCGGAGATTTGATGCCGCTGTCAAAGTGATACAGAGCTTGCCTCCAGACGGTTCTTTTCAGCCCTCCAATGACATGATGCTCAAGTTTTACAGTTACTACAAACAGTCCACACTAGGACCCTGCAACACACCCAGACCTGGTTTCTGGGACCCCATGGGCAAAGTCAAATGGGATGCATGGAATGATCTGGGAGAAATGCCCAAGGAAGAGGCAATGATTGCTTATGTTGATGAATTGAAGCTGATCCTTGAGGGCATGCCCTGTACTACTGAGGTAGAGCAGCTGCTGCTGGTGTTGGGCCCCTTCTATGAGCAGGTGCAAGAGAAGAAACACATAAATCAGGTTTCCGACCTGTCTGCAGGTTTTGGGACCATGATTACGTCAGCACCTTCAAAAAGTGTCACAAGGAGCATCATCAGGACAATGGAAATGAATGGCACTTTGGAGACACGGCCACCCAGGCCGGCGGCTGAGCCTCCAAAGCCCAAAGTCATGGCAGTGAaggaacagggggaggaggaggaagaggagtttgAGTTTGATGAGGAAGATGAAGTTGAAGAAGAAGAAATTGCTGAGATCAAGGAGGTGAAAAAAGCAAATGAAAAGTCGAGGAAAAAGGGCTCATCCAGGAGACCTAAAGTCCCCCTGTCCGAAGGTAATGTGAGGAACGGGATGAGCCACTTTTCCAATGGGACCCACACCTCCAAGGCTGCGCTGAACAATGAGGACTCAGAGGAGCGCCTCTTGAACAGCACCCTGCCCCTGGAGCCTCATGTCCAGGTCAACGGCCACCACGCAGATCTGGATGTATCCTGGCCCCGTCATGTGGCCAGTGACTCAGACAGCGAGGTCTACTGTGACTCTATGGACCAGTTTGGCCTGGAAGAGGGCTCTGAGGCACACACTGACCGCTGTCTGGAGCTGGATGAGGAAGAGCAGGGGGAGAGCCACAGCCCTCTGTCCGATCAGGAAGGGCCCGCCGAGGCACCGTGTGGGACCCCTGAGGACTCCCAGGGGCCACCCAAGGGCATCCAGTGTGGCGGGGAGGATGGGGAGACGAGTGGAGGGgcctctcagagacagagactgaataCAGATAGGGTCGATAACTCCCTGGTTAGGAGAGAACgagGCTCCAGGTCTTCAGGGCACGGCGTGGAGGCCCAGGGGCCCTTGCAGGGTAGCGGAGGGGACGGGGAACGATGGGGTGGAGCGGGGGCAACAGGAGGCAGTCTGAATGAGCAGATCGTAGTGGCGCTGGCCAGACTGCAGGAGGACATGCAGAGTGTCCTGGAGAGATTGCACACACTCGAGGCCCTCACTGCATCCCagTCGTTGGCTCTACCATACCCACCATCACCCCTGGCAAATAAGGGTAGTAAGAAACCATCCTGGTGGCCTTTTGACGTGTCTCCTAGCGCTGTTGCCTTTGCTGTGGCATGGCCATTTGTGGCGCAGTGGCTTATCCGCCTATATCTTCAACGTAAGAGGAGACGAATCAACTGAAAAGTCTCCCGTCCCAAAGACACAGAGCGACGATGAGAGCTCTCTCAACAGTCTCTGGTTGGGTAACGGCCGTAGCCTCCCTTCCGCTTTCCCACCCACACCTCTGTAACTCTAGCTTTTGCACTATGAAGATGGCACTAGGAGTAGTGAGTTGGGGGAAGCCTCACAACCCACTGAGTAGTGAGTTGGGGGAAGCCTCACAACCCACTGAGTAGTGAGTTGGGGGAAGCCTCACAACCCTACAATTGAAATCAAAGAGAAATGTGAATGAATTGAACTGCAGCTTTTATAAATCATGCAATATTATACAACTACTGTACTACAttagtacttttttttttttgctctgaaGAAATGACGATGATTTAACTTGGGCGGGTAAAGTTATTGGTTGTGTATGTTGAGTATAGCTTATTTTCTTGCTAATGTTCCGTACGTCTTACGGCACGGAtcggcaactttgatggggggtGTGttccaagaagaagaaaaaaaaacgaaactcCCCTTTTTAGCGGTTCGTCTCCTGACAGCGAAAAAATTGACGTTTTAAacttaatttcctgcaattctgcatattttgccatggggcgtacagaaaaatgttgccgttttaaatATGACTGATGATCAGTGGGCCCCACCCCAGTTAGTAATTTAACCATGTttactacaagtttagacagCTGGCCACTAGACTAGCTAAACTAACTGACCAATGTAAAAACATTTAGCTGACCTGGGCTTATTGAGTGACTGCTGATTGCACAACAAAAACTGAATGTCGAAATTGCAGCttatgtattctactattctaactctccaACATTTTATTTTGTCGGTCAAATTGGTCCGCGGGCCTTCAAAGGGGGGGAGAGGTCCGCGGGCCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069730 lncRNA upstream 26210 6235238 ~ 6236139 (+) True G937930
TU1069725 lncRNA upstream 37138 6224779 ~ 6225211 (+) True G937925
TU1069723 lncRNA upstream 40300 6221282 ~ 6222049 (+) True G937923
TU1069697 lncRNA upstream 94658 6167104 ~ 6167691 (+) True G937899
TU1069628 lncRNA upstream 113558 6148427 ~ 6148791 (+) True G937851
TU1069738 lncRNA downstream 51 6283809 ~ 6498275 (+) True LOC110535195
TU1069762 lncRNA downstream 6437 6290195 ~ 6290678 (+) True G937948
TU1069768 lncRNA downstream 9969 6293727 ~ 6295153 (+) True G937952
TU1069771 lncRNA downstream 24061 6307819 ~ 6310140 (+) True G937955
TU1069767 lncRNA downstream 37312 6321070 ~ 6321981 (+) True G937951
XM_036934735.1 mRNA upstream 114266 6141715 ~ 6148083 (+) True LOC110535188
XM_021620046.2 mRNA upstream 122632 6127375 ~ 6139717 (+) False LOC110535186
XM_036934738.1 mRNA downstream 13947 6297705 ~ 6320962 (+) False LOC110535194
XM_036934739.1 mRNA downstream 13948 6297706 ~ 6320962 (+) True LOC110535194
LOC110536537 mRNA downstream 62249 6346007 ~ 6353351 (+) True LOC110536537
XM_036934740.1 mRNA downstream 95686 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA downstream 95686 6379444 ~ 6480492 (+) False LOC110536538
TU1069683 other upstream 140080 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 757020 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1117784 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1234204 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1240736 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 735393 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 737318 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1290594 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1536762 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1856508 8140266 ~ 8140583 (+) True G939690

Expression Profile