RNA id: TU1069738


Basic Information

Item Value
RNA id TU1069738
length 1473
lncRNA type read_through
GC content 0.38
exon number 2
gene id LOC110535195
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6252982 ~ 6498275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgccagttgcccatcccttaCAGCATTATAAGAACTATCCAACTGGTCCTGCAAATGGACATGCTGCAACAGAAACCTTACGCCATATATCATAATAGTTGCTCAGGCTGCTAATATATGGCGATAACGCTAGGTAGATAAGTGTgtgtataaatatataataatgtatTTGTGGAAAGGTGCATTTAAATTCTGAAAATGTGTTAATTTTCATTTAATATTAGAAATAATAAATTAAGACTTTATTGTCTCGTTTTTGGTTAGGTTGTACATTACTGCTAGGATGTGAATGGTTCAGATTaagaatatttttttaatatcgAATCGGCTGTTATACACTCGATTTGTGTATATTTAGAATTTCATCAACTCATGATAAGGTGCCTCACCAATGTAGCTGTGTATAGTACATGGGGGATGGGGCCTAGCGCTTAAGAATGTTGTGCTAGTGACCGGAAGGTTGATGGTTCAAAtacccgagccgactaggtgggGGAAAAAAAGTCTGTCGACGTGCTATgcatttaaccctaattgctctggatacgagcgtctgctaaaatgttttatttgagtaAAACATCTCAAACGTAAAATTGTAATGTTGGTCCAAATTCTGAGAAAAATAAAGATGTGAAACTCTAATTGAACACTCAAATATTACCACCTCAGAAGAAATAAAACGTTTAGTAGTGATGGGAGATACGCTTTTCAAATAAATATATTGTACTTTTTTTGATGATGACTGTTCATATTTTTTATGTTCAAAAGTTTtgtgggtcacttagaaatgtccttgttttccatgaaaacatacatgaaatgagttgcaaaatgaataggaaatatagtcaagacgttgacaaggttataaataatgatttttaattgaaataataattgtgtccttcaaactttgctttcgtcaaagaatcctccatttgcagcaattacagccttgcagacctttggcgttctagttgtcaatttgttgaggtaatctgaagagatttcaccccatgcttcctgaagcacctcccacaagttggattggcttgatgggcacttcttacgtaccatacggtcaagctgctcccacaacagctcaatagggttgagatccggtgactgtgctggccacttcattatagacagaataccagctgactgcttcttccctaaatagttattgcgtagtttggagctgtgctttgggtcattgtcctgttgtaggaggaaattggctccaattaagcgccgtccacagggtatggaatggtgttgcaaaatggagtgatagccttccttcttcaagataccttttaccctgtacaaatctcccactttaccaccaccaaagcccccacagaccatcacattgcctccaccatgcttcacagatgGCATCAaacactcctccagcatcttttcattttttctgcttctcacaaatgttcttctttgtgatccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069756 lncRNA upstream 9193 6274066 ~ 6274616 (+) True G937942
TU1069730 lncRNA upstream 47670 6235238 ~ 6236139 (+) True G937930
TU1069725 lncRNA upstream 58598 6224779 ~ 6225211 (+) True G937925
TU1069723 lncRNA upstream 61760 6221282 ~ 6222049 (+) True G937923
TU1069697 lncRNA upstream 116118 6167104 ~ 6167691 (+) True G937899
TU1069875 lncRNA downstream 4414 6502689 ~ 6504091 (+) True G938038
TU1069885 lncRNA downstream 15956 6514231 ~ 6514587 (+) True G938045
TU1069909 lncRNA downstream 49856 6548131 ~ 6548763 (+) True G938069
TU1069932 lncRNA downstream 81689 6579964 ~ 6581867 (+) True G938089
TU1070296 lncRNA downstream 115825 6614100 ~ 6617787 (+) True G938358
XM_036934733.1 mRNA upstream 51 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA upstream 51 6262349 ~ 6283758 (+) False LOC110535195
XM_036934734.1 mRNA upstream 51 6262349 ~ 6283758 (+) False LOC110535195
XM_036934735.1 mRNA upstream 135726 6141715 ~ 6148083 (+) True LOC110535188
XM_021620046.2 mRNA upstream 144092 6127375 ~ 6139717 (+) False LOC110535186
LOC110536540 mRNA downstream 161153 6659428 ~ 6675322 (+) True LOC110536540
XM_036934747.1 mRNA downstream 514073 7012348 ~ 7051404 (+) False LOC110535201
XM_036934749.1 mRNA downstream 872568 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA downstream 872574 7370849 ~ 7427263 (+) True LOC110535202
XM_036934750.1 mRNA downstream 949139 7447414 ~ 7502456 (+) True LOC110535203
TU1069683 other upstream 161540 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 778480 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1139244 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1255664 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1262196 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 520876 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 522801 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1076077 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1322245 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1641991 8140266 ~ 8140583 (+) True G939690

Expression Profile