RNA id: XM_036934738.1


Basic Information

Item Value
RNA id XM_036934738.1
length 4008
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC110535194
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6297705 ~ 6320962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTATTCCAGGCATCAACATTAACGCATATTTTGTAAAAAGTAAAATCAACTCGTTTACAAATGTTTGACAACTACGTGGTAAACCAaattatttgtttaaaaaaacaacaacaacaaaagaacaCAAATTGGAGAAGTAACTAGAGAAGTGTAGCGAAGAAAAATAATCGTGTTCAAACCGGTAGTAATTTCTTCCAGAAGTCACGTTGATGTTGACCTCTCAGGAAGAAGCCATTTTCACGAAAGTAACAGTTTAGTAACAAGAGAGaaagaacaacaacaaaaggacTGTACCCAGGAGGAGTTGGTATAATCAGTAACATTGAGGGTCTGTCTTCACATACTAACCCTCAAGTTGCTGTGATAATGTTGTCCTTCTCGGCGTCGCTCCAGCCACAGGTAACGAGTCAACTCATTAGCCAACTCATCAATGCCCTCCATTCCCTGAAGAACTCAGCCAGCTCCACAGCCACAGCTTCTGTCCAGAGCCTGCAGACATACGTCACACCAGAGCAGGACCTGTTGCTCACAGAGGACCTGGGTCTATCAGAACAGAGGGTGAGTCAGCCCACCGTGAACCTCCGGGACCTGGGCTTATCAGACCTGAGGGTGGGTCAGCTGGATGAGCTGGTGAACAGGTTACTGCCCTCGCCGGGCTCAGAGGAGGGCCCAGCTGCTTCAATATGGAGGACGTCCCACGTCTCTGCGGACTCTTTCTTACAAAACAAACACGGGTTGTCAAACGGAAGGTTTGGTGTTTTTGGCTCGCCAATGTTCCACAGACCGAACCAGAGTCCTCTACACGCCATCTGTTCAGAGCTCCAATACTGGCCTGtAAGGGTCCAGAACCGAGGCTTCAAGACTCTGAGGAAGAGCAAACGCGTGGAGTCTGGTTACCAGGGGCTGGCAGAACCAGAGGGTTACACTTCAGCATTCATGAAGGGTCTCCTCATGAGACCTGACAAGTCCCCAGAGGCACAGAGTCTGGATCACGTGGTAAAGCAGAAGAACCTGCAAGGTGACCAACAAGATTCCTTCAAGTCTGGTTTCACCGAGGGCTTCATGAGGTCCCAGGCCTTCACTCAGAGGACACACGACTCGCTAAGGAGGACCAGGCTGATTCTATTGGTCCTCCTCGTTGTGGGAATCTATGGCCTGTCAAGAAGCCCGTTTCTTTCGGGTAAAGGGTCCTTTTCTGATGCTGTGAGGTTCCGCACCACGTCAGGCCTGGACTCCCAAGTGGACCCGGTTCAGGTGAAGAGCGTCACGTTTGAGCACGTTAAGGGGGTAGAGGAGGCCAAGAATGAACTGCAAGACGTGGTGGAGTTTCTCAGAAACCCCCAGAAGTTCACCGTGCTAGGAGGGAAGCTCCCTAAAGGCATCCTCCTGATTGGCCCCCCAGGCACGGGAAAGACTCTCCTGGCTCGGGCTGTAGCCGGCGAGGCCGACGTCCCCTTCTTCTACGCATCGGGATCCGAGTTTGACGAGATGTTTGTGGGTGTCGGAGCTAGCCGCATCAGAAACCTCTTCAAAGAGGCGAAAGCCAACGCACCTTGTGTTGTCTTCATTGATGAGCTTGACAGCGTGGGAGGAAAGAGGATCGAGTCTCCCATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCAGAGATGGACGGGTTCAAGCCAAACGAAGGGGTCATCGTTATCGGCGCTACAAACTTTGCTGAGGCTTTGGATAATGCCCTGGTACGTCCGGGGAGGTTTGACATGCAAGTGACCGTCCCTCGTCCGGACGTGAAAGGACGTACGGAGATCCTCAACTGGTACCTGCAGAAGATCAAAGTGGATCCCAACGTGAACGCGGCGATCATTGCCAGGGGGACGGTGGGCTTCACGGGGGCGGAGCTGGAGAACCTGGTGAACCAGGCAGCCCTGAAGGCAGCGGTGGACGGCCTCGACCAGGTCACCATGAAGGAACTGGAGTTCTCCAAGGACAAGATCCTCATGGGTCCTGAGCTCAGGAGTGTGGACATTGATAAGAAGAACAAGCAAATCACAGCCTACCACGAGTCAGGCCACGCCATTGTGGCCTATTACACCAAAGACGCCATGCCCATCAACAAGGCAACCATCATGCCCAGAGGACCCACTCTTGGCCACGTGTCCATGCTCCCAGAGAATGACCGTTGGAGTGAGACGCGGGCTCAGCTCCTGGCCCAGATGGACGTCAGCATGGGAGGCCGCGTGGCCGAGGAGCTCATCTTTGGCGACGATTACATCACGACTGGCGCGTCAAGCGACTTTGACGGGGCGACCAGAATAGCCAAGATGATGGTGACCAGGTTCGGAATGAGTGACAAGCTTGGTGTCATGACCTATGCTGAAGTAACCAAACAGAGCCCTGAGACGCAGGCTGCCATCGAACAGGAAGTCAGGGTCCTGCTCAAGGACTCGTATGAGCGAGCCAAAAACCTCTTGAAGACCTACAGCGATGAGCACAAGACGCTGGCCGAGGCTCTGCTAACGTACGAAACTCTGGATGCCAAAGAGATCAAGCTGGTCCTAGAGGGCAAGGCCCTGGACCCTAGATGACTCGCTGAGAGACGCCTCGTCAGAGACTGTTAGAAGTCAGGGTTGGGGGGTCATTCCATTTAAATTctagtcaattcagaaagtaaaccaaattccgaTTCAAAATGTTCCTCAATGGGAAAAGCATTGAAGATAATAGGAATTGGAATTTCAtcgtacttcctgaattgactggaattaaaatggaatgACCCCCAACCCTGTAAGACATATTATCTGAATTATGTAAATTTGAAGATGTACAATGGAGTGGCCTTTAGAGGTTTTATAGGTTTCTTCCCCCTCAACGTAAATGACTGACTAGCTCATAGTCGCACCTCGTTTTATCCCTCTGAACCTATGACTCCTCTTGTCTGAACCATTCACGTTGGGCAGGCATTCCCGTACGGCAGCTTTGTCAAGCGACAAAGGCCCCATAGCAAGGTTCACTTCAACACCCTGAGCTCAAAATGCCCTTTCAATGCCAGGATTTTAGTTTTTTGATATCGACATTGTCGTCGTTTTCCCCCTTAAAGTTTGTATATACAATATTGATCTAGAAAGTGCTGCATTATGATGCATTAACGTGCTCCTGGGAAAGTGGGAGGTTGTAAATCCGATATGTGCTTTTGAAGTCGGACCAATTCTTGAACCAATaagaagctagctaacattgctaAGAattaagttagctagcttgctaaacatTTGCCGATTATGGTCAAACTGGCTACGGTATCCACATTGATAAGTTTGTAATTGTCAAATTTATTTATTGTTAACTTTTGGTTGAAACGGGGTGGTTAAATGTCTTCGTtattaacaaacaaaaaatgcaGTTTGTAATTACGACTTGGAGAGTCGTTCAAGTGAAACTTGAAACGACAGTTTCAGAAGCATGTgaccgcccccccccccaatagtcCTCAGCCAATAGGATCTTATAGCGCACAATTGTTTTTTTCTTTAGTAATTTTGTGCATGAAAGCCTCGTTGTGTATTTAGTAACGAAGTTATGAGGGAAAACAACTGTTGGCAGATCTGATCCTACTTGACCTATAGCCTTTTCACTGAGCAGAATATTAAGTGATAGAAACGCCGACCATAAAATATGGGtttatcattaaaaaaaaacacacacatttttaacATGCACATACAATCTAAATACAAAATGGCTGTATCAGCGTTCCCTTATATGATTCATCGTCTGTGAGTTGTGAAGGAATTCATCTGCGTTCACTGTATGCAGGTCAATATACACATTTTATGttgtcattttatttatttacccaACGTGTGCCGGACTTGCCATCGTTAGCTATTTTAGGCCCTCGTGTCTGTGCCCATCCATGGTGTAAATGAAATGTGAGAGGAGATGTACTTAAATCTGTTTCTCATTGGAAGTGGATCTTGTGGAAGCTCAAATAAAAATTATTCTAAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069768 lncRNA upstream 2552 6293727 ~ 6295153 (+) True G937952
TU1069762 lncRNA upstream 7027 6290195 ~ 6290678 (+) True G937948
TU1069756 lncRNA upstream 23089 6274066 ~ 6274616 (+) True G937942
TU1069730 lncRNA upstream 61566 6235238 ~ 6236139 (+) True G937930
TU1069725 lncRNA upstream 72494 6224779 ~ 6225211 (+) True G937925
TU1069767 lncRNA downstream 108 6321070 ~ 6321981 (+) True G937951
TU1069782 lncRNA downstream 20002 6340964 ~ 6341310 (+) True G937966
TU1069789 lncRNA downstream 35670 6356632 ~ 6357043 (+) True G937973
TU1069794 lncRNA downstream 38456 6359418 ~ 6360293 (+) True G937975
TU1069804 lncRNA downstream 58638 6379600 ~ 6386395 (+) False LOC110536538
XR_005034540.1 mRNA upstream 12998 6262349 ~ 6284707 (+) False LOC110535195
XM_036934733.1 mRNA upstream 13947 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA upstream 13947 6262349 ~ 6283758 (+) False LOC110535195
XM_036934734.1 mRNA upstream 13947 6262349 ~ 6283758 (+) False LOC110535195
XM_036934735.1 mRNA upstream 149622 6141715 ~ 6148083 (+) True LOC110535188
LOC110536537 mRNA downstream 25045 6346007 ~ 6353351 (+) True LOC110536537
XM_036934740.1 mRNA downstream 58482 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA downstream 58482 6379444 ~ 6480492 (+) False LOC110536538
XM_036934742.1 mRNA downstream 58484 6379446 ~ 6480492 (+) False LOC110536538
LOC110536540 mRNA downstream 338466 6659428 ~ 6675322 (+) True LOC110536540
TU1069683 other upstream 175436 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 792376 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1153140 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1269560 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1276092 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 698189 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 700114 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1253390 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1499558 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1819304 8140266 ~ 8140583 (+) True G939690

Expression Profile