RNA id: LOC110536537


Basic Information

Item Value
RNA id LOC110536537
length 1689
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110536537
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6346007 ~ 6353351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGGCGGTGCCACTCAACACACTGCAACTCAGTGTCAGTTTGTCATTTCACCAAATTCTCCTGAGTTGAGTGTCAAACTGGATCACGTTGAAAATGAGACAACGTTTAAGATACAATCACCTACAGTAACGTATGCATCAGGCAGCATATCATGCAAGCAAGGGAGGTTGGCCGAGGAACAGGACATCTCTAAAGACTCGGTTTACAAGTGATGCACATCAACTATGAGTACTGACGACTTCTACAATTACCTAAGtaacagagggtttcagtatgGTTCTGTTTTCAGAAACAGAGGAGATGTCCAATATGGTGACGACTTGATGGAAGCCATCTCTGTTGTGTCTGTCCCTGAAGAGCTCCTGCCACAGTTGCATGACTTCTGCATTCATCCTGTAGTGCTAGACTACTTGCTACAACTGACTCAAGTCACAACAGTGACTGCATTCATGGCAAGGCCTGGCTTTCCTGATGAAATTGGCCGGTGGACTGTTCCTCGAACCCTTTGCAGCCTGAAATGGTTCTGTATTTGAGAGCTGCAAATGTTGCAGTGGACAATTTGGAAGTATCTGTCTGTTTCACAGACAAAGCAGGCCGGGTGTTGGTTGAACTGAAGCATGTTATATTCAAGTATCTTGGAAGTCAATCTTGTGTAGTTGAAGAATACTTCTTCCACAATGACTTCAGTGTTGTCTCTGATGACTACAAGCCCATTAATAAACCCAAGGCATTGGTCTTCGCTGACCAGATGAGTGTATCCGTAGCCATGCAAAAACATTTGAGCTCACAGTCTCAATACGTCTCTTTCACACATGCCAATGATCTCTTGAGCCGTGGATTTAAAGCGCCGTTCGATCAAATCTCGAACAACTTTGAAGAAATCTTGTTTGTGTGGAGCAACGACAATGTTACATCCCACGAAACAGAGGCTATCCTGGAGAACATGGTCAGCTGCTGTGAGATGTTCCGACAAATAGTCCTGGAACTGAAGGTAATGAAATTTCCAAATTCCATCAGAGCAATAACCTACCGGTCAGCAGAGAACACAGTGGACTGTATCAGCCCAGGCTTTGTCATGTCAGGCATGACTAGATCTCGTGCTGAAGAAATGTCAGATATTTTTATTAGCTTGTCTGGGCAGTTCATCCTTCAGATTGCTGATCAGTACAGAATGACTAGCTTGTCTGCTGTTCCCTGTGATGTTGAGGATCAGAACATCCAGGAGAAATAAGTTGAGACTCAGCTCAGTAAGATAGGTGTTCATTTCTCAGACTACTGCTGTCCTGTCAGTGTCTCTGACCTGAACTATGGTCAGACAATGTACTGGAACAATCACATCTCAGAACCACCAGCTTCTGGCTCTTGACCTCAGTGGTACTGTCACAGCTGTAGGAAAAGATGTGAACACACTGAAAGTGGGAGACCATGTAAGTATCATGTTATCCCATTGCTGCATCTTCTAAGATTGCGATTCCTGAAGCAGCATGCTACAAAACAAAGAGGCTCACATTTCTGAAGGAGGCTCCTTGTGTGTCCTACTTTGTTCTTGCATGGGAAGTCTTGCATCATGCATTACCCAAAGTCAAACAGCGGAGGTTGGGCATCATCTCATCTGTTCCTGACTCATGTTTGACAAAGATCTTAGCCCAAACTGCAAATAAATCAGGATGGTATAAATCTTGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069782 lncRNA upstream 4697 6340964 ~ 6341310 (+) True G937966
TU1069767 lncRNA upstream 24026 6321070 ~ 6321981 (+) True G937951
TU1069771 lncRNA upstream 35867 6307819 ~ 6310140 (+) True G937955
TU1069768 lncRNA upstream 50854 6293727 ~ 6295153 (+) True G937952
TU1069762 lncRNA upstream 55329 6290195 ~ 6290678 (+) True G937948
TU1069789 lncRNA downstream 3281 6356632 ~ 6357043 (+) True G937973
TU1069794 lncRNA downstream 6067 6359418 ~ 6360293 (+) True G937975
TU1069804 lncRNA downstream 26249 6379600 ~ 6386395 (+) False LOC110536538
TU1069819 lncRNA downstream 38171 6391522 ~ 6391792 (+) True G937993
TU1069825 lncRNA downstream 46064 6399415 ~ 6400670 (+) True G937998
XM_036934738.1 mRNA upstream 25045 6297705 ~ 6320962 (+) False LOC110535194
XM_036934739.1 mRNA upstream 25045 6297706 ~ 6320962 (+) True LOC110535194
XR_005034540.1 mRNA upstream 61300 6262349 ~ 6284707 (+) False LOC110535195
XM_036934733.1 mRNA upstream 62249 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA upstream 62249 6262349 ~ 6283758 (+) False LOC110535195
XM_036934740.1 mRNA downstream 26093 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA downstream 26093 6379444 ~ 6480492 (+) False LOC110536538
XM_036934742.1 mRNA downstream 26095 6379446 ~ 6480492 (+) False LOC110536538
LOC110536540 mRNA downstream 306077 6659428 ~ 6675322 (+) True LOC110536540
XM_036934747.1 mRNA downstream 658997 7012348 ~ 7051404 (+) False LOC110535201
TU1069683 other upstream 223738 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 840678 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1201442 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1317862 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1324394 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 665800 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 667725 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1221001 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1467169 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1786915 8140266 ~ 8140583 (+) True G939690

Expression Profile