RNA id: XM_036934750.1


Basic Information

Item Value
RNA id XM_036934750.1
length 2405
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110535203
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7447414 ~ 7502456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGGCTGTTTTGTTAGCGAAAGGGGGCGTCGATTACAGTAAATCCTAATGTAATGCAGCTGTTAGGATAGCCTGCATAATGCCATTGAATACCTTATTTTTTATCTTTCTTTGGAGCAGTTTTGCTTCAAAATGATATGATCTAATCGCGGAAACAATGCCACTAGACCAACAGGAACTCGAGCTAACATTGGCGCTGTCACTGCTCCTATCCCGCATTGACAGCTGGGTTACGCGGAGGCTCGTCGGTCGTATGCTTTGTGTGATGCGGGAAGCTGCTGAACGTTTTGTTGTGGAATGAAATCGACATTGTGATAAAGTCTTTGTTCATCTTTTCATTCAAAACGGAGTTTGAAATTCGGCAAGGAGAGATGAAGAATCTACTCCCTGGGATAGTCCTGACGTTTTTGATATTTTTAGAGTGCATAGAGGCCAAAAAGTACTGCTGGTATTTTGAAGGCGGATACCCCATCTACTTTATATGCCGCTCGTACGAGGACTGTTGTGGGACCCGATGCTGTGTCCGAGCCCTCTCCATCCAGCGGCTATGGTACTTCTGgTTGATGCTGATGATGGGGGTGCTATTCTGCTGCGGAGCGGGCTTCTTCTTCCGCAGGTGCATGCACCCCTCGCCCCTCAGCGACGAGCATGCCTTCAACGTCTCCTTCACCAGGCAGCCTGTATCCACGCCAGTATCCCAGCAGCCTGGCATGGTAGGCTATGGCGACCCCGGCGGCGTCATGACTTCCCCCCTCACCCCCGTCTACCCCATCCAGCCCGGCCCCGCCCATATGATGAACGACTACCCTCCACCACCCTCGTACTGCAACCACCCACCCCCGCCTTATGAACAGATTTTCCGGACACCAGAGAAGAAGTAAGTCTCAGTAGCGTTTCCCTCCGTTCCTTCTCCTTCGCTGTGACATCACCAGCAGAAcggacaaggacatgaggggacaGCCACAGTGTCTGTCCACTGTTATACCGTCAGCCCAAGTGCTCACCCAGGTCACAGGGACAAGAAACTGAGAACCACCTAGAGGAACAAACTGTCCTTCCTGAGGACCTGGATACAGACCGGCTCAATATGTCTCCATGGTTTATATTTTCAAAATCATTCATTCTTTCTAATTTACACaaaagcatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacccgtCTTTTTCTGCTGACAGTGCCATCTTGATGAGCATGGTCTGTGACTGATCTGTAGTGAGGCACTCGGACTCCTGTAAATGACACAACTGAGGAATTTCAATGGAGAAtgctgacccaagatcagcacaTTGCTTCTAGATGAACAGATTAATGTTAGCATTATGGTAGAGTAAGCTGACCTAGGACCAGGGCATAAGAACAGACACTGTCTAAAACTGTACACGAGTGACAGCAAATTGGAGTTGAAAGCCACCTTGGAGAAGTTACTACACAAGGTGTTTTAAATAGCTGAAAGGGGTAAAGACTCTGTTAGGATGCGTCCACACTAATTGGGCTGCTTGTCTCGTCCTGAATCCTGTGACTATAAACACTCCGGGCAGGAAGTCTGATCGCTGTGAAGGAGGGGAAACGGATCTGGATTTATCAGACCTATTATGTGCGTTGGGGAGAGCGGTAATTTGGAgaggcagatttttttttttaattttttttttaattcacacTATGTATTCCTACTGTGCTGACTGTGGCGATTCATCCCTCTGGATCGGGACAACAAACTGCCACAAACTGGCAAGAAATCCACTCAACCAGACGGACTCCAAATTGAGACCAAGTCATGTGGTTGTCCATTGTGACAATTTCAGTCAGTTTTTTGGAACTATCACCACAGAGGTTCAGTAATGGTTTTTCAGAGATCTGGACTTCAGTTTGTATAGTAAGGAGCTCGACCAGAATGAGGATTAACTCAGATCAATGCGTTTGTTCCAGACACGCATGCATGCAGGTTGCAACTGGATCACTTTTCACCGAGGAGCTCAAGGACTTTGTTTGCTGTACCTTCGAAGTATTCACGTCCCTTATCTTTTTCCACATGTAGTTGTTACAAAGTGcgatttaaaatgttttttgttgtcgttgtttttgtcaacgatctacacaaaatacttgaATGTCAAAGTGTGGGAAATATCCTACAGCCACCACTAGGCTTGataatatggagagtggtactcagtaatgcattggattggatttgccccaaacatgacACTTTGTTGTCAGGACAAAATGTTCAaggctttgccacattttttgctgtattattttatttattttagtgccttgttgcaaacaggatgcatgttttggaatatttttttttctatacaggcttccttcttttcactctgtcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1071235 lncRNA upstream 7212 7439921 ~ 7440202 (+) True G939238
TU1071232 lncRNA upstream 10528 7436687 ~ 7436886 (+) True G939235
TU1071160 lncRNA upstream 120309 7325479 ~ 7327105 (+) False G939179
TU1071161 lncRNA upstream 121235 7325479 ~ 7326179 (+) True G939179
TU1071158 lncRNA upstream 122223 7324345 ~ 7325191 (+) True G939177
TU1071404 lncRNA downstream 48227 7550683 ~ 7550929 (+) True G939384
TU1071407 lncRNA downstream 49528 7551984 ~ 7552248 (+) True G939387
TU1071473 lncRNA downstream 148892 7651348 ~ 7651557 (+) True G939449
TU1071475 lncRNA downstream 150934 7653390 ~ 7653627 (+) True G939451
TU1071476 lncRNA downstream 151581 7654037 ~ 7654408 (+) True G939452
XM_036934749.1 mRNA upstream 20151 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA upstream 20151 7370849 ~ 7427263 (+) True LOC110535202
XM_036934747.1 mRNA upstream 396010 7012348 ~ 7051404 (+) False LOC110535201
LOC110536540 mRNA upstream 772092 6659428 ~ 6675322 (+) True LOC110536540
XM_036934740.1 mRNA upstream 966922 6379444 ~ 6480492 (+) False LOC110536538
XM_021622308.2 mRNA downstream 460553 7963009 ~ 7969001 (+) True LOC110536543
XM_021620072.1 mRNA downstream 467471 7969927 ~ 7971811 (+) True LOC110535207
XR_005034786.1 mRNA downstream 669416 8171872 ~ 8174025 (+) True LOC110536601
XM_036936611.1 mRNA downstream 672337 8174793 ~ 8175785 (+) True LOC118937436
XM_021620079.2 mRNA downstream 693151 8195607 ~ 8226038 (+) False LOC110535212
TU1070683 other upstream 425990 7019151 ~ 7021424 (+) False G938723
TU1070682 other upstream 425990 7021076 ~ 7021424 (+) True G938723
TU1069683 other upstream 1325145 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 1942085 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 2302849 5143317 ~ 5144565 (+) True G937096
TU1071428 other downstream 71896 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 318064 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 637810 8140266 ~ 8140583 (+) True G939690
TU1072090 other downstream 693912 8196368 ~ 8379328 (+) True LOC110535212
TU1072199 other downstream 872050 8374506 ~ 8377928 (+) True G940102

Expression Profile