RNA id: XR_005034543.1


Basic Information

Item Value
RNA id XR_005034543.1
length 2154
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110535219
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8799540 ~ 8802257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccaccaggctCCTCTGGTGGATAGTAAATGTGtatttttgatgtgatatgaaagtacagTTCTTTATATTTCTAGAACCATACTGCACTTGAGAATCGATTCatgtttagatggagtatttggctgttttggctgccAGAGCCAGTTCACCTCTAAACAGAGCATGTCAGGTCCTTATAAGGATTCATGTTAGGCTCCTTTAGTCCATTCTTGggctaatagctagctagctatttgtctTCTGTAGCGTTATtgctaataatatatatatagctaCGGTAGCGTTGTTGaacagttatactgtatatatctctACTTACTGAGATCTATTACCAGTCACACAGATGTATAAGGTCTGTACACATTCATTCCTAGGTGGCTTCAGGTACAGTGCATGTTTGAGATTTACACGAGGGTCCAAGATGGAACATCCAAGGTAAGTACTGTCATTGAAAGTTCACATTGGCGTGGACTCACGATGATTCACGAAACTGTTAAGTTGATCAAAAAGTTAGCTTTCCACTATCTTGTAGGGTTTGTCTTTCCTGGACGTGCGATAGCTGTTTTACCTACGATGTCACTCACCTGATCAGTCTCAAATGAGAGTAGGGAAGTGTTAAAGACAACGGCGCTCTTCACAGACTGGCCACCGTTAGAACGCTAAATTAATCAGAAGACCGAGGGTGAAAATGGAAAAAGGCTAAAGGCGCTAAGAAAAGTGCCATCTAGTGGCAAGAAACATGTTCCCCCAAGATTGCTTCAATACACTATGagagagacatgaacGATGCAGAGAAATACAAAGCAGAGACGTCCTTAGCTGTGTGACCTAAAAGCCCTGGCAGccgtgcagcgacgctcccacaGCCACCACAGGGACTTCAGGACAGAGTCGAGAGCAGGAAAAACTTTGAAGAGTCAGTGATTCGTCTGCAAGTGCCCCAAACGAGAGAAACACTTAAAATGAGGAGTGCATGCTAGGAATGTCTGGTCAGCTAAGTGACATCCCACAGTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGGGACCGGTGAGTTGGCTACATTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGGGACCGGTGAGTTGGCTACAGTTCAGTGACATCACAGCCCTGAAGGGCGGAGGGGGACCGGTGAGTTGGACACATTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGGGACCGGTGAGTTGGACACATTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGTGTCTGGTGAGTTGGACACATTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGGGACCGGTGAGTTGGATACAGTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGTGTCTGGTGAGTTGGACACATTTCAGTGACATCACAGTCCTGAAGGGTGGAGGGTGTCTGGTGAGTTGGACACATTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGGGACCGGTGAGTTGGATACAGTTCAGTGACATCACAGTCCTGAAGGGTGGAGGGTGTCTGGTGAGTTGGACACATTTCAGTGACATCACAGCCCTGAAGGGTGGAGGGTGTCTGGTGAGTTGGACACATTTCAGTGACATGCCACTCCTTACTGCCATGCAGTGAACgataagtgtacaaaacattaagaacaacaAGTTGCACCCCgctgtttcccccccccctcagaacagcctcaactcgtcagggaatggactctacaaggtgtctaaagagttccacagggatactggaccgtgttgactccaatgcttcaccAAGTTGTGttatgttggctggatgtccattgggtggtggagcattcttgatatacacgggaaactgttgagcgtggaagagccatcagtgttgcagttcttgacacactcaataATCGGAGgagcgcctggcacctaccatgACCCGTTCATAGgcaattaaatattttgtcttgcccatttcaccctctgaatgtcacacaatccatgtctccagGCTTATCAATCCGTCTTTaacccagtctcctccccttcatctactctgattgaagtggattgaacaagtgacataagggatcatagctttcaccgggTCAGTCGGTCATGGAATGAGCAGGCATTAAAATGTTTGTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072544 lncRNA upstream 10627 8788498 ~ 8788913 (+) True G940380
TU1072543 lncRNA upstream 56416 8710911 ~ 8743124 (+) False G940379
TU1072541 lncRNA upstream 56416 8713653 ~ 8743124 (+) True G940379
TU1072568 lncRNA upstream 62818 8702436 ~ 8736722 (+) True G940402
TU1072538 lncRNA upstream 146547 8651504 ~ 8652993 (+) True G940376
TU1072610 lncRNA downstream 973 8803230 ~ 8803555 (+) True G940437
TU1072634 lncRNA downstream 35354 8837611 ~ 8837834 (+) True G940461
TU1072621 lncRNA downstream 93731 8895988 ~ 8933322 (+) True LOC110535228
TU1072669 lncRNA downstream 129614 8931871 ~ 8976279 (+) True G940493
TU1072706 lncRNA downstream 227297 9029554 ~ 9106845 (+) True G940520
XM_036934764.1 mRNA upstream 113884 8650438 ~ 8685656 (+) True LOC110535213
XM_036934763.1 mRNA upstream 302520 8381370 ~ 8497020 (+) False LOC110536544
XM_036936634.1 mRNA upstream 461900 8294346 ~ 8337640 (+) True LOC118937462
XM_021620079.2 mRNA upstream 573502 8195607 ~ 8226038 (+) False LOC110535212
XM_036936611.1 mRNA upstream 623755 8174793 ~ 8175785 (+) True LOC118937436
LOC118937463 mRNA downstream 43308 8845565 ~ 8855476 (+) False LOC118937463
XM_021620091.2 mRNA downstream 54849 8857106 ~ 8860218 (+) True LOC110535221
NM_001124275.1 mRNA downstream 67319 8869576 ~ 8880714 (+) True LOC100135908
XM_036934775.1 mRNA downstream 87483 8889740 ~ 8896710 (+) False LOC110535228
XM_036934772.1 mRNA downstream 89955 8892212 ~ 8896710 (+) False LOC110535228
TU1072537 other upstream 147019 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 258673 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 359765 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 417960 8379847 ~ 8381580 (+) False LOC110536544
TU1072199 other upstream 421612 8374506 ~ 8377928 (+) True G940102
TU1072646 other downstream 50237 8852494 ~ 8855437 (+) True LOC118937463
TU1074217 other downstream 1442852 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 2308469 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4585293 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 5262291 14064548 ~ 14065869 (+) True G946426

Expression Profile