RNA id: LOC118937463


Basic Information

Item Value
RNA id LOC118937463
length 907
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC118937463
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8845565 ~ 8855476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGTTATTAACTGAGGAGGAACACGATTATATTGATGTGCTGACTTACCTATTGAGGAGTTTTCTGCCCAATCATGTGGCACACAAGGACACATACCAGCAGAAAGCATTCTGTGGTGTGTACAGTAACGATGGCAACATGTTCCCCTCAGCGGGCCACGACCAGAACCTCTGTCTGAATGACACCAGTAGGGGGAGCTTTAACGTGAAGCAGTCACCCCAGACTCCCACAAGATGCTCTATTCCAGCTGGTCTCACTACACACATGTCTGCAGTGTAGATGAGGACAGTGAAACCCACACCGATCTGGACCTCAACCCAGATATGAATAGGTTCTGTGTCTTCTCTCTGGCTGCCTCCAGAGGGAAAGGGGTCATTGGAGACCTAGCTAATGATGGCTGCTTCTATGGTATCGATCGGGAACAGAATAAGATAACTCTTAAAATCAAAGCTCACGACCACGATGTGAACACAGTGGCGTTTGCCGACAGCTCGTCCCAGCTGCTGTTCTCAGGCAGCGACGACGCGCTCTGCAAGGTGTGGGACAGACTGACGCTGCGGGAGGACAGACCCAAGCCCGTGGGCCAGCTGTCTGGACACAGAGACTGTATCACCTTCATCCACAGCAAGGGCGACGCACGTTATCTGATCAGTAACTCAAAAGGACCAGTCCATCAAACTGTGGGACATGAGGAAGTGGTGGCCTCGCGGCTGAACATCGTCCAACAGGACTGGGAGTACCGTTGGCAGCACGTTGCCCAGAATGCCCAGGAGAGACACTAGCTGGCAGGCGACACCTCAGTGATGACCTACAGGGGTCACGGTGTtctgcacacacactcatacgcTGTCGGAGTTCACCGCCGGACAGAAGGGGGTGGAAACAAGCGAGGAAAAGGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072634 lncRNA upstream 7731 8837611 ~ 8837834 (+) True G940461
TU1072610 lncRNA upstream 42010 8803230 ~ 8803555 (+) True G940437
TU1072548 lncRNA upstream 43330 8801931 ~ 8802235 (+) True LOC110535219
TU1072544 lncRNA upstream 56652 8788498 ~ 8788913 (+) True G940380
TU1072543 lncRNA upstream 102441 8710911 ~ 8743124 (+) False G940379
TU1072621 lncRNA downstream 40512 8895988 ~ 8933322 (+) True LOC110535228
TU1072669 lncRNA downstream 76395 8931871 ~ 8976279 (+) True G940493
TU1072706 lncRNA downstream 174078 9029554 ~ 9106845 (+) True G940520
TU1072698 lncRNA downstream 191308 9046784 ~ 9090727 (+) False G940515
TU1072713 lncRNA downstream 193129 9048605 ~ 9073783 (+) True G940526
XR_002475217.2 mRNA upstream 43308 8799540 ~ 8802257 (+) False LOC110535219
XR_005034543.1 mRNA upstream 43308 8799540 ~ 8802257 (+) False LOC110535219
XM_036934764.1 mRNA upstream 159909 8650438 ~ 8685656 (+) True LOC110535213
XM_036934763.1 mRNA upstream 348545 8381370 ~ 8497020 (+) False LOC110536544
XM_036936634.1 mRNA upstream 507925 8294346 ~ 8337640 (+) True LOC118937462
XM_021620091.2 mRNA downstream 1630 8857106 ~ 8860218 (+) True LOC110535221
NM_001124275.1 mRNA downstream 14100 8869576 ~ 8880714 (+) True LOC100135908
XM_036934775.1 mRNA downstream 34264 8889740 ~ 8896710 (+) False LOC110535228
XM_036934772.1 mRNA downstream 36736 8892212 ~ 8896710 (+) False LOC110535228
XM_036934773.1 mRNA downstream 36736 8892212 ~ 8933286 (+) False LOC110535228
TU1072537 other upstream 193044 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 304698 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 405790 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 463985 8379847 ~ 8381580 (+) False LOC110536544
TU1072199 other upstream 467637 8374506 ~ 8377928 (+) True G940102
TU1074217 other downstream 1389633 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 2255250 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4532074 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 5209072 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 5299878 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile