RNA id: XM_036934772.1



Basic Information


Item Value
RNA id XM_036934772.1
length 2190
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110535228
representative False

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8889740 ~ 8933322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaaccatacttaggtagctttttcccacctatgttttgtgggtagttgttttctgtttagtgttttctgcacctgacaggactgtttcagttTGCACTTTGGTCTTTTTGTGTCAGTgttcagttaaataaaggtcatgaactcttaccacgctgcgctttggtccgattcctccTCATCAGACGACGACACACGTGACAGTGGTGTTTTGGCCTGCTTTGGTCAAAGTGATTTGATCACCACAATGTCAGATAGACTGGATGTACTGACTGGCTCCTGTGTGCAAATCCCATGTTCATTTGATATTCCTGACCTACATAAGGATACATTTAACAGCGCAATACTAACCTCTGGAGTGTGGATTAAAGAAAACCCAAACTTTCGTGAGTGTCCGGACAGAGTGATATTTAACAGTAGTGAGACGGTCAACAGATATCAAGGGAAGATAACTGGAAACATGTCCCAGAAGATCTGCACCACAGTCTTCTTCAATGTAACCACCAATTACACTAATAAATACTACTTCAGGATTGAGAGTCAACCATTCCGTGCAACAGACACTGAAAAGTCTGTTTATATAGATGTCGGGGATTTGCCTTCCAGTCCCATCATTACTGTCTCAGGTGAGGTGAAGGAAGGGACCCCTGTCAGTTTGAACTGCTCTGCTGTCGCTCCCTGTCCTGAACAcccccctgagctgacatggaTTCTCCCAACACAGTTCACAACTGAGAACCAACTGCAGGAGAATTCAGACCAAACCAAATCAGTTCTCTCCACGGTGACCTTCACTCCATCATACCTTCATCATGAGAAGAACATCACTTGTACTGCAGTCTACCCAGTAGGGACAAGCAACAAGACAGCTGAACATAACATGATGCTTAACGTTTCATtctctcctaaggacacattggcctccatcagtcCAGCTGATTCAGTATCAGTGGGCAGCTGTGTTAATCTGACCTGCAGCAGTACAGCCAACCCTCCTGTGACTAACTTCACCTGGTTCCAGATCAGTGGGGGTAAAACAACACAGGTAGCATCTGGACTGAGTTACACTCTCAATGTGACTGCTGGTGATGGAGGACAGTACTTCTGTGAAGCAAGAAATAGTCACGGCTGTGGGAAGTCGAATGAAGTGCAGCTGGCTATAAAAGGGCAAGAAGAGACTGTTAACACAATGGTTTTTGGGATTGCAGCAGGAACTTTGGGGGTCCTTTTGCTTATCAGCCTGATCAGTGTTATTGGATGGAGGAGAAACTCGAGGCTCCACGATGGACTTGAAAGGACAGACAGTCCACAGGGACAGAACTCCCCGGTTGGGACAGTGTGTACTAACCAGGCCACAGCCGGAGAGGAACCAGAGGAACCTGCAGAAGACCAGCCTGAAGAGATCCACTACGGTGACATAGACTTCTCCAAACTACAGACCAAAGAGATCCCAGCTGCAGCCCAGGACAGGGTCCAGGGACAGGAGAGTGAGTACGCTGAAGTCAACGTGACTGGGAGAGGGGCCCAGGAACCACCTCTTAACAACCTAGATGGGCTTTATGCACAAGTGAATAAAACAGGTGGATGCTAAGTATTTTGCAATTGGGTATCAAGTGTTTTTATGTAGAGTATTGTCATTGTGTATTAGTTTCTAATGGTACTTTTGTTACATTTATAATTGTGTGCTCTTTAATTATCTGCATATTTGTAGAATTTTCTGGGATGAAAAGTGTTTAACTGTTACTATAGTGTTGATACGATGATGCAGGCTACTCTTTATtttagaccatttattttgagtGTTGAGTTCACAGAGCATCTGTTTAATGGGTTCCAGTATAGAGGAACTGCTGAGTTCAACTAGCTCACTGAAGGCAGTTTAAGACCATATAAAGTCAATGATGACTGAGGAGAGAAGACACAGTTAGTTGGAGAGACAGTGGTCTGATACAAGACAGGAAGTTGGTGAAGTAAGTCTACATGATGTCAGAATGGTGTTAAAATCTACTAGTCACTGTTTATCTTCCTCTTTTGTGCAGTTCCCAGAATAATAATATCTATTTTCAGTTTATATCTATTTAGAAGtaattatttcagtttttatgttGAGTGTTAAATCGAAGAAACAATTGAGACTGAATTTCAGGTTGTTTATTAATTGCCCTGCAATAAAAACCTTTACATTCAATGTC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1072634 lncRNA upstream 54378 8837611 ~ 8837834 (+) True G940461
TU1072610 lncRNA upstream 88657 8803230 ~ 8803555 (+) True G940437
TU1072548 lncRNA upstream 89977 8801931 ~ 8802235 (+) True LOC110535219
TU1072544 lncRNA upstream 103299 8788498 ~ 8788913 (+) True G940380
TU1072541 lncRNA upstream 149088 8713653 ~ 8743124 (+) True G940379
TU1072669 lncRNA downstream 35161 8931871 ~ 8976279 (+) True G940493
TU1072706 lncRNA downstream 132844 9029554 ~ 9106845 (+) True G940520
TU1072698 lncRNA downstream 150074 9046784 ~ 9090727 (+) False G940515
TU1072713 lncRNA downstream 151895 9048605 ~ 9073783 (+) True G940526
TU1072715 lncRNA downstream 152155 9048865 ~ 9100838 (+) True G940527
NM_001124275.1 mRNA upstream 11498 8869576 ~ 8880714 (+) True LOC100135908
XM_021620091.2 mRNA upstream 31994 8857106 ~ 8860218 (+) True LOC110535221
LOC118937463 mRNA upstream 36736 8845565 ~ 8855476 (+) False LOC118937463
XR_002475217.2 mRNA upstream 89955 8799540 ~ 8802257 (+) False LOC110535219
XM_036934776.1 mRNA downstream 24530 8921240 ~ 8925741 (+) True LOC118937299
XM_021620101.2 mRNA downstream 41645 8938355 ~ 8946588 (+) False LOC110535229
XM_021620102.2 mRNA downstream 41645 8938355 ~ 8946621 (+) False LOC110535229
XM_036934770.1 mRNA downstream 41645 8938355 ~ 8968485 (+) False LOC110535229
XM_036934771.1 mRNA downstream 65712 8962422 ~ 8968485 (+) True LOC110535229
TU1072646 other upstream 36775 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 239691 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 351345 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 452437 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 510632 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 1348399 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 2214016 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4490840 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 5167838 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 5258644 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile


XM_036934772.1 Expression in all Baseline Samples

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XM_036934772.1 Expression in each Bioproject

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XM_036934772.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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