RNA id: XR_005034814.1


Basic Information

Item Value
RNA id XR_005034814.1
length 138
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC118937475
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9290727 ~ 9290864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACTGCATGGTATCAGCAGCCAGCCACTACTCTGGTTCCACTGTTCATTAGTCAGTGCATGAGCAATTCGACATCTGGCATTGTTGGTCTCCATTCCTCTCTGTGCTGGGAAACCTGGTATACAATCGTTTCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072781 lncRNA upstream 9587 9280929 ~ 9281140 (+) True G940586
TU1072774 lncRNA upstream 19713 9270643 ~ 9271014 (+) True G940579
TU1072765 lncRNA upstream 26075 9262749 ~ 9264652 (+) True G940574
TU1072764 lncRNA upstream 29435 9260998 ~ 9261292 (+) True G940573
TU1072701 lncRNA upstream 143269 9120707 ~ 9147458 (+) True G940516
TU1072768 lncRNA downstream 6243 9297107 ~ 9342400 (+) False G940576
TU1072767 lncRNA downstream 6311 9297175 ~ 9302514 (+) False G940576
TU1072769 lncRNA downstream 6311 9297175 ~ 9342601 (+) False G940576
TU1072770 lncRNA downstream 6311 9297175 ~ 9302611 (+) True G940576
TU1072830 lncRNA downstream 76187 9367051 ~ 9381784 (+) True G940632
XR_005034544.1 mRNA upstream 314323 8972920 ~ 8976404 (+) True LOC118937300
XM_036934770.1 mRNA upstream 322242 8938355 ~ 8968485 (+) False LOC110535229
XM_036934771.1 mRNA upstream 322242 8962422 ~ 8968485 (+) True LOC110535229
XM_021620102.2 mRNA upstream 344106 8938355 ~ 8946621 (+) False LOC110535229
XM_021620101.2 mRNA upstream 344139 8938355 ~ 8946588 (+) False LOC110535229
NM_001165190.1 mRNA downstream 28168 9319032 ~ 9329583 (+) True LOC100305285
XM_036934811.1 mRNA downstream 66165 9357029 ~ 9405871 (+) False LOC110535239
XR_005034552.1 mRNA downstream 120014 9410878 ~ 9412277 (+) True LOC118937311
XM_021620129.2 mRNA downstream 880985 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 881151 10172015 ~ 10175528 (+) False LOC110535246
TU1072646 other upstream 435290 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 638206 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 749860 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 850952 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 909147 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 954245 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1819862 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4096686 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4773684 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4864490 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile