RNA id: XM_021619875.2


Basic Information

Item Value
RNA id XM_021619875.2
length 1636
RNA type mRNA
GC content 0.44
exon number 6
gene id vapa
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10666207 ~ 10671992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagttatcacTGCACAACATTTATCGTCAGCCGCGGAGGGCGTATGGTCTCTAGTGACCCTAGTTAGCTGACTTCTTACTGTGGCATTGACACGGATAACTACTGTAACGTTAGTTTGCTGTCAGTCACTCAGGGATCattgatagctagctaacgttagcctgaAATAATAGTCACTGACATGGTTGTTTGGCCATGTCCCTTCACAGATGTAGTGACCACAAACCTCAAGCTCAAAAATCCCTCTGACCGAAAAGTATGCTTCAAAGTGAAGACTACGGCACCTCGCCGGTACTGTGTACGGCCCAACAGCGGCATGATTGAGTCAGGAGCGACTGTCACCGTCTCTGTAATGCTGCAGCCCTTTGACTATGACCCCAATGAAAAAAGTAAACACAAATTCATGGTACAGACAATCTTTGCACCATCCACTGCTACAGACATGGATGCAGTGTGGAAAGATGCAACGCCAGATGATTTCATGGACTCCAAGCTGAGATGTGTGTTCGAACTGCCCACTGACAACGATAAAATGGATGATGTTGATGCAACCAAAGCTGCCCCCGTCCTCAACTCCAACGCTGACGGCACATCGGCGCCCAAGCCAATCAGCGCGTCCGTGGACGACTCTGAGATTAAGAAACTGATGGACGAGTGCAAGAGGCTGCAGTATGATGTGGGCAAACTCTCAGACGAGAACAGACAACTCAAGGACGAGGGCCTGAGGATGAGGAAGGCCCACCGGTCAGACAACATAGTCTCCAGCTCGGGCGCCACGATGAGCAAACAGCATTCTTCCAGTTCCCTTCCCTCGCTACTGGTCGTCATAGCAGCCATCTTCATCGGATTCTTCCTAGGGAAGTTTGTCTTGTAGGCGTGGAGCGAGAGAAAAGAAAAGTGAGCCGGCATGGGCTCGTTTGTCTCCAAGGGCCTGGCCGTAGCGCCAGCTCACGGCCTACGTACATATGTTCTGTGTACCCAATCATAAGCAGGCCTCGCCTTTTACAATCTCACATGGTTAGTACACGTGGAAAAACAGAAGAATGAGCTTTCTCCTTTTTTGGGGGTTTTTCCTGATCTTTTTTTGGGGTGAGGAATCAGGGGAGGGATGTTTTGGGGGAAAATGTAAATTGTACATTTGTCAGAGCATTGATAACAGGTGAGTCGGGGCACTGGGTTTGTGACCTTGGTTGAAATCggaagcaaaaaataaataaaaaatgagctctctctctctgtggttttAATAAGAGTTTGAATGTTCAGTGTCTTGTCCTGTTATTTTAATAATTTTAAGAAAATGGGATGAAGAAATAGCCTTCCAAACAAAAGACTCTGCTACATGTTGCCTAAACATTCTCATTTTCACTCAATTCTTCTAATCTTGGTTTTTCTTGAGGTATGTGAAAAGATACAGTATGCTGGGAATATAGGTGTCTCCTACTTTTCCTTTTCCCTACTGACATAAACACACAATTATAAAAAATGaatttttattattattctttctagaatttttttttttcctttaaaCAAATTCTATATCCCTTGTGAGGCAAAAATATCTACGTTCTTGCAGTCCTGTCCCATGGTATTTAACAttgatgaaaaataaataaaatctttaACATTCTA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10707 VAPB, ALS8; vesicle-associated membrane protein-associated protein B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1074451 lncRNA upstream 19263 10646468 ~ 10647288 (+) True G942106
TU1074313 lncRNA upstream 24767 10639997 ~ 10641784 (+) True G941976
TU1074441 lncRNA upstream 44904 10621448 ~ 10621647 (+) True G942096
TU1074438 lncRNA upstream 61444 10604902 ~ 10605107 (+) True G942093
TU1074437 lncRNA upstream 63752 10602556 ~ 10602799 (+) True G942092
TU1074471 lncRNA downstream 14051 10686043 ~ 10686884 (+) True G942123
TU1074472 lncRNA downstream 15372 10687364 ~ 10687579 (+) True G942124
TU1074489 lncRNA downstream 25706 10697698 ~ 10704427 (+) True G942134
TU1074493 lncRNA downstream 34593 10706585 ~ 10706898 (+) True G942138
TU1074500 lncRNA downstream 37841 10709833 ~ 10711750 (+) False G942140
XM_021620141.2 mRNA upstream 27129 10631364 ~ 10639422 (+) True LOC110535252
XM_036934818.1 mRNA upstream 42531 10395438 ~ 10624020 (+) False LOC110536547
XM_036934819.1 mRNA upstream 42531 10395438 ~ 10624020 (+) False LOC110536547
XM_036934820.1 mRNA upstream 42531 10395439 ~ 10624020 (+) True LOC110536547
XM_036934817.1 mRNA upstream 298872 10315401 ~ 10367679 (+) True LOC110535248
XM_021620151.2 mRNA downstream 353645 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA downstream 367637 11039629 ~ 11064599 (+) True LOC110535262
XM_021620153.2 mRNA downstream 483688 11155680 ~ 11158395 (+) True LOC110535263
XM_036934852.1 mRNA downstream 506340 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 506340 11178332 ~ 11497838 (+) False LOC110535264
TU1074217 other upstream 421045 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 1811114 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2014030 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2125684 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2226776 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 438734 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2715558 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 3392556 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3483362 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3499550 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile