RNA id: TCONS_00003841


Basic Information

Item Value
RNA id TCONS_00003841
length 117
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_001959
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11498693 ~ 11498809 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCACAGCCGTATCACCCTGCAGACAAAGACCGGTTACTCATTGAAGCTTAACAGGGCTGAGCCTGTTCAGTACCTGAAtgtgagaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000176144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005834 lncRNA upstream 236807 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 511391 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 675245 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 675245 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 681063 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005688 lncRNA downstream 14577 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 153785 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 153940 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 427264 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 427264 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003838 mRNA upstream 126152 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA upstream 130217 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003834 mRNA upstream 186351 11282883 ~ 11312342 (+) False XLOC_001955
TCONS_00003835 mRNA upstream 186351 11286741 ~ 11312342 (+) False XLOC_001955
TCONS_00003837 mRNA upstream 187924 11309814 ~ 11310769 (+) True XLOC_001956
TCONS_00003842 mRNA downstream 268982 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003845 mRNA downstream 1018250 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003846 mRNA downstream 1501561 13000370 ~ 13063743 (+) False XLOC_001968
TCONS_00003847 mRNA downstream 1501860 13000669 ~ 13038542 (+) False XLOC_001968
TCONS_00003848 mRNA downstream 1501895 13000704 ~ 13064110 (+) True XLOC_001968
TCONS_00003830 other upstream 382723 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 511391 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 675245 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 695337 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1585516 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003843 other downstream 275596 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 834444 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2357983 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2432039 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003873 other downstream 3756373 15255182 ~ 15287900 (+) False XLOC_001989

Expression Profile

//