RNA id: XM_021620151.2


Basic Information

Item Value
RNA id XM_021620151.2
length 4845
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110535262
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11025637 ~ 11064599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGCCGTGGTGTCGGGTTTCACCGCGAGCAGGCATGAGAGTAGGAGCGGTCGATTGCTTCATTCATTTTCTGACAAGAGTAGCGCAGCGTGTGCCAATGCAAAGTAGGCAACACTCAACCCCGCTGGTTAACAGTAGCTAGGCGCTTACTTTGGTATGATATTTTGGCGGTGAGCGATGGAAATGAAAGACTCGTGCAGTGTCATTTTAACAGCATACCATTCATACGCACAGTCCAGGATACATTTGGTGGATGAGGGCTATGCGCCTCCAAGACACTCTCCTTGCAGGAAGGTGCAGTACCAGGGGATAGACCTACTAGGCAGGATGAGTTCTAGGGGGACCaggccctctccccctcccagccCACCGGAGCGGCCGGCGTCACGGGACTCCCAGGACTCCATGGAGGACTACTGGAGCGAAGTGAAGAACATCGAGGAAGATGGCCAGCGGGGCCACGAGGACTTGCTGGAGAGGGGCAGTATGGACGAGGCGGAGCTTGAAGAGGCGTGGCTGCAGGATGCGGGTCTTTCCACGCTGGTGTCGGGGGCGTTGGGGGAGGGGCCTGCGGAGGCGCTGCTCTCCACGCTAACGCGCTCGCAGGCAGCCATGGTGAAGAAGCGTGTGGATAATTACACCCTGACCGTGAGGAAGAGGAGCAAGCAGCCGACTAGACACGTCCGAGACATCTTCTCCACGCCAGACACATCGCCAGTTGATCCCATACCCCCTGTCCCCCCCAAGTCACCCAATGGAGACATGCCTTCCAGATGCGTCCACCGGACGTCTTCTAGAGtgAGGCCTGCGTGTCCCAGCTTCTCCCAGAGCACAGAGAGACGTGTTTTAGAGTGCCCTCACTGCCCACCACCTCAGGACACCTCTGACTCCCTGTCTTTCGAGGTGCCCTACTCAGAGGGCACCACTGCCCACCACAGGGGCCGCCAGGGGGACTGCCAGGACTGCCAACGCATCCACAGAGATGACCATGACCTGCCAACATTTCAGCTGCCCAGGCCTAAACTGGGCCTCACCCGCATCCAGGACCTGTCTTGTGAGGACATGAAGAAGATCGGCTACATCTCTTTGATTGAACTGACCACCTTCTACGACGGCCTGGGCATCGAGCTCAAACGCAACCGAGCGGCACGTAGCAAGGCCAGAGAAAGTGGTATATTTGGAGTTCCCCTGACCACTCTACTGGAGAATGACCAGAAGAAGTTTCCTGGGTCCAAGGTTCCTCTTGTGTTCAGAAAGCTCTTGTCCAAGCTGGAGCAGACAGGACTACAGACTGAGGGGATTCTCAGAGTACCAGGGTCTGCCTCCAGAGTAAAGCATCTGCGCCAGGAGCTGGAGCAGAAGCTCTATGAGGACCGGTTTGACTGGGAGCAGGTGAGGCACAATGACGCAGCGGGTCTGCTGAAGATGTTCATCAGAGAACTGCCTTATCCTCTGCTCACGCTCCAGCACGCTCCTGCCTTCTCCGCCGCACAGAATATCTCCTCTCCCAGACAGCAGATCCAGGCCCTGCACCTCCTCATCATGCTGCTACCTGAGCCCAACAGAGACACACTCAAGgCGCTGTTGGAGTTCCTGAGGAAGGTGGTTGCCTATGAGGAGAAGAACAGGATGGGTCTGTGGAACGTGTCCATGATTGTGGCTCCCAACCTCTTCACCTACCGGGGCAAGAACGCCAAACAGGAGGAGATACAGGGCGCCGCAGGGGCAGCCCACCTCGTACGGCTACTCATCACACACCAGGACCTGCTCTGGACCGTGCCCTGCTTTCTCATCTCCCACGTGAGGAAGTTAAATGAGGCTGGTGCCAGCAAGAAGCCGCCCAGCTCAGAGAAGACCAAGAGGAAGCTGCTACAGATGAGGAGGAAGACCACTGAACGAGAGAAGACTGAGAGGAGCGAGCTCACTGACCTCCGACAAGGGGTCATCAGGGTTCACGCCCCACTACACGCCAAGATCTCCATGGCGATCCAGCTTGACAACGAGACCAAGGCCAAAGACGTTATGGCGCGCTTCGATTACGAGAACGGTCGTGGCACCAGAAACAGTAGCCGGAGGCCACGTCAGTATTTGTTTGAGGTCGGAGGAAACATAGgtgAACGCAGCTTGGACCCTGAGACTCACCTTCTAGACGTGTACCACGTGAATCCCCACTGCGAATGGGTCTTAAAACCCACAACCACATGAGAACTGAGGAATCACTCACTCAACACAGAGCACAAGCAGACTGAACCACTGCTCTCGAGGTCAACCTGGTGAACTGACCATGCATGGAGGCCTGGTTGAATTGAGGTTTCATCCCCAACTACAGACCACTAAAAAGAGAGACAGCACTTAAAAAGGGACTATGGAGAGGTACATTCTCCTGCTGAAGGATAGATGTTCCTGTTTTGTGGGATTAaaccttttttaacaaattactCAAAAAAAGGACGGAAACACTGTACTCTGAAAATCCGGGTTCTGTATGGAAGTATTTGGAGGAGCAGCAGCTTTGTGAAGACGTGCCACACACGTGACCAACAGCATACTATTTCTGGACATTCGAATTGTTTGATGCCAAATATGTGCGCAGCAAGGTTCACCCACTACAGAGGCCATGGACACAGTAACAGACAAGGATGGGTCCGATAATCAAATAATGTTTACCACTTCATGCAAGACCCAGTTAACATATATTTGCTATATTTATACCACTAATTGATCCTGCTTTTAGTATTGTCACACATACTACATGTAACTtttgtgtcattttgtaattGCAGCATGTTGATTGCAAAACCATTGGGAGTGAGGAGATTCAGAACATGTGCATGATGGGAAGGAACAAGCGGAGATGGGATGATCTTATACTGAATACAGACATTGTTTCCATCTCCAACGTTGAAACAACTTCCTTTTCACGGTCTCTGATCAGGACTAGGCAGGTGATAACAATTTAGTGAAAGCCTATCCAGTCCCTTCACCTGTCAGTGGTCATGAAGGAaaggtggtgaggagaggaagctGTGTCAAGAGTATTGAAACACAGCCCcacatcagaaactttgaacaagGATTCCAACCATTGTCAAACCCACCTTCTTCTCTGCTTTTTGGGTTTGCATGTTGAACACTTAAACCTCTCCCTCCTAATACATCTCCTCACCCCAGTGGACTGTACACACTACAGTATGACTTAACACACTCAACCAATCCTGTGTCTAGTCTACATAAGGGACTTGAATTACATGGCTGGAGAGTGTTTACAATCCCTCCTCTAATGAAGAAGAGAAAAGGCCATGAAAAAAAGGAGCTTCGTAGCAGTTAGCCTGACATGCTTCCAAACTGATTTTACTTCGTTTCACTTCAAACCACAGTGTTCAGTCGGTTTTAACCAGGCTAGCCTTTGCCTGCTTACAGTGTTTGAACTTGCGAATAATGTTTACTTTCAGGGCATGTATGTAcagcatgtatgtatgtatgtatgtatgtattagcCCAACCAACCTCTCTCCACTTTGTTCTGGGTCGTTCCACCAACTTTGTGCCTTTTTGAGAAGTGTACCTTAGTCAAAAATACTGAATTCACCTAATttgaacattctgtcataaagagcacatgttaaaCTTAATAAAATACCTGTTTTCCCatcaaggtaaaataaaaaaataagttcctattaagtgccaaataaagtaacatggctgactgtaacagggttgatgatttAATCTTTAAacagccataaatccccttgttgTGAGAAATGTGAAAGTAAgcttcaaaatgttttttttattttttttattgttaaaaAATGTCGTTAtgttcgaccccccccccccacgcactTTTCCATCACAAAACACCAGAACATGGtaaaaaaagagtagaaccaaCTCATCTGCTTTTACACCATGGGTTTGACATTGAACATTTACTAGTTTCTTTTGaaaaatacatttataaatgaaacgagttcagttcacgtaaccGGGTTGACCTTGAGGGACAGACGTACATGAATCACTCGTCACGTTAAAtacatcttcagaaatgactttcaGAGAAATAAAATAACTAGGACTTTATAATGATGGTGAAAACCTGGGAGATATTTTGGGGTTAAGGGGGTTAAAGTCTTTCTAGAAGTCAGAGTTGACATTCAGAGTTGCTGAATTTTGGCACTATTAAAATACTTATTGGATTCttcatgtggtctatattaaagggcacttaatttaacataacaggcttttaaaatgccTTATTGGTGCTCGATTTCTACTTAGCATATTAAAGGCACTCTTTGTGGAACGACCAGCAGTGTTAGCCTAGCCTGGCTTCCAAACTGGTTTCACTTCAAACCATAGTAAATTCAGTCTGGTCTAACCAGGCTAATCGTAGCCTGCTTGCAGCATTTGAACTTGTGACTGTTTACTTGCAGCTCATGTACGTATTAGTCAAACCAACCTCTCTCTACTTCTACTATGCTGTTACTGTAGTTCAGTGTTTGCCTGTGCCATGATTGTCAGCCTTTTGTTGTTACAAGTATTCTGTGGTCCCAAAAATGAACCTGTAGAAAATGCATTGAAAAGATTGTTCTGCTCAGGATTATTTAATTTATCCTTCCAAAGCTATTGTGTGAAAGATTAATTTGTACCATAGACTTACTACAATGTGTGTATTGTCTGTATATAGAATACTGCATTTTGCacgtttttattttgttttatttgctTTCTTTTATTTGACCACTGCCGACAGTTTTGGCCAAGTGGCACAATGTCTCACTGACACAGTAACAATTGAATATAActtaaagtaaaacattttcttCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1075002 lncRNA upstream 127639 10897033 ~ 10897998 (+) True G942570
TU1074968 lncRNA upstream 151882 10872952 ~ 10873755 (+) True G942540
TU1074979 lncRNA upstream 170855 10854580 ~ 10854782 (+) True G942547
TU1074974 lncRNA upstream 187710 10836193 ~ 10837927 (+) False G942543
TU1074975 lncRNA upstream 187710 10836413 ~ 10837927 (+) True G942543
TU1075118 lncRNA downstream 12589 11077188 ~ 11077489 (+) True G942677
TU1075119 lncRNA downstream 13265 11077864 ~ 11078117 (+) True G942678
TU1075123 lncRNA downstream 17554 11082153 ~ 11083258 (+) True G942682
TU1075125 lncRNA downstream 18903 11083502 ~ 11083796 (+) True G942683
TU1075128 lncRNA downstream 20850 11085449 ~ 11085659 (+) True G942686
XM_021619875.2 mRNA upstream 353645 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 354052 10666207 ~ 10671585 (+) False vapa
XM_021620141.2 mRNA upstream 386215 10631364 ~ 10639422 (+) True LOC110535252
XM_036934818.1 mRNA upstream 401617 10395438 ~ 10624020 (+) False LOC110536547
XM_036934819.1 mRNA upstream 401617 10395438 ~ 10624020 (+) False LOC110536547
XM_021620153.2 mRNA downstream 91081 11155680 ~ 11158395 (+) True LOC110535263
XM_036934852.1 mRNA downstream 113733 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 113733 11178332 ~ 11497838 (+) False LOC110535264
XM_036934854.1 mRNA downstream 113734 11178333 ~ 11497838 (+) False LOC110535264
XM_036934855.1 mRNA downstream 113734 11178333 ~ 11497838 (+) False LOC110535264
TU1074217 other upstream 780131 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 2170200 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2373116 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2484770 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2585862 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 46127 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2322951 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 2999949 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3090755 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3106943 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile