RNA id: XM_021620153.2


Basic Information

Item Value
RNA id XM_021620153.2
length 2716
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110535263
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11155680 ~ 11158395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGTCAGCACACATTTCTCAAATCAGTCCCCTTGACAAACACACGTCTTTACTGCTCTGCGACACTCCGCAACACTTGGCCAGCACTTCCAGGGTGGATATCCAGCAGCATTTTACATCCGACACACACTAAGTGAGAATGTACACAGTTCCTCTGTTGACTGTCGACCGTTCCAGCACTGACCAAAGCTGCTTGTCTGTCGCTCTCCACCCTATCGGTTTAGGATGTTTTGTGGCTAGTGCTTCTGGGTAATGCTCGTTAGCATCTTGTTGTCTTGACATTGGTATTCCTGCTGAAGGAGCACCAATGGGACACAAGCAGTCCAAGGAAGAGGAGATGAAGAGGCAGGCGAGGAAGAGTGCCGGGCGTGAGGACAGCTTGACGTCGGCAGAGCGGATCCGAAACCACGCGTACAAACAGTGGGGCTACAGCATACTGAGCCTGGCCCGTCGCGGCCTCAAGGAACCCCCCAAGGAACTGTGGGAGCTGACGGAGCTCGAGAAGCTCAACCTGTCGTTGAACTGCCTGAGGGCTCTGCCCCCCGCCCTCAGCATCCTCAGCAACCTGGTGGTCCTCAACCTGTGGGGGAACCAGCTGACCAGCCTGCCCCCAGAGATCGGCCAGCTCAGACACCTCCGCGTCCTGTTCTGCTACCGCAACCAACTGACCGAGGTTCCAGAAGAGCTGGGCAACTGCACCAGGCTGGAGGTCCTCAGCCTGGCCAACAACGAGATATCTGGCCTCCCTGCCTCCTGCGCCAACCTGACCTGCCTGAGGAAGCTCAATCTCAGCCACAACAAAATTGTTCACATCCCCGGCTGCGTCTACACCATGAAGAGACTGGTATTCCTCCACCTGGCCTGCAACAGGCTGGAGTGCATCGCCGAGAGCATCGCGGCACTGGTGGAGCTCAAGATCCTCATCGTGGAGGGGAACGAGATCCACTCGCTGCCCAAGATGATCTGCTGCCTGACGCGGCTGGAGCTGCTCAACGTGGACTTCAACGACATCCAGAACGTGCCCCAGGAGATGCACCAGCTCAGCAGGCTGGAGAAGCTGGCCTACCACCCTCTGGATAAGGGACTCCACATCATGCAGAACCCCTTGCAGAAGCAAATCAAAGAGGTGCTGGAAGGAGGCCTCATCGCCCTCTTTAATTATCTGAAATCTAATTAAGACTCCTCCACAGAATTTCTTCTGGGGACCCATTGTTGTTCTCCACGAGGAGGATGCGATTTTGGAGTGATCCTCAACATGCACGAGAAAAGTATGAGAAAAAGCTAAGATTGTTGTTTTTTCATTTACAATACATAACAAGATGATGCAACTGTgattttgtaaaaaataattagGCTACTAACTGAATGACAGTAGTCATGATGCTTATGTAGAGTTGTACCTAACAACTCTATTTGTGTTTAACATAATTGAGACACGTCTGTCATTATAAACGTCTAAAAGCAATGCTCAGTGGGGCTAAACACATTGCATTGAAATAGACTTGGACTGTTGGGAGGAAATCATCTAATGTATAGCAAAGCTCTGCGGTCAGGATCCTCACATTCTGTACCAGAGGTGATCTAGAGAAGAGGCCATGTTTCAGGGGGAGCCTTGGCATGTCTCTAACACGAGATGACCTCCGACCTCTCATTCAATTACAACCTCTCTTAGTCTTGGAGCAGGTCGTCGGGATCAAGATCAGGAGGCTTCCATTACATCAACAGAAAGTGCAGCCTTGAGACCAGCCGTGTTTGCTGCTGTAGTTATCTACCCAACTCCTTTAAAGAACAACAAGCAAATTCTGTTGCCAGTCTCCAACGATCACATGCTATAATGcacacagtcaatggacctacagtCTTAATCATGCCTATTTGGGTTGGAATAGCATTTAAGTTTGTTTGCCACACatgctgaatgtagtacctcaTTGCACCTGAATGtagcatttttaaaaaaaaaaggggtTATGTGTACATGTCAGCTGGTGTTGTTTATTCTGCCTTACTGTAAAGTTGCCCATTTTAATTATGTCATCTTATTATGCAGGATTACCTATTGCTGTGTTAGTTTGAGGGGCAAATGCGCTCATTACAATTTTATTGACCTGTTCTTAAGTCAGTATAAACTGAGGTCTAAATAAATATTAGATATTTATCCCCCAAAAAAACTATGCCTCAAATTTTTCCTGTGAACTCGTAACTCTTACAGAACACAACGATTAAATCAGTCAAGATTCTGTGTGATTGGTGGTTCATGTCACAGTTCATTgtccaggtcaaaggtcatgAGAAACAAGACCTGCGGGTATCAGAATAGGATTCTGCTCTGAAATATTCTATATCATAGACATTTCAGACATTTATGCAAAATCCTgcaagcatgtgtgtgtttttagaaaATTCCTATCAACGTTACATAAGCCTCAAAAGATCCACAGTCCACTTTGTATGTAGCTGTTATGTCTGTTTCAGAGACATTCAACCTGTATGATGTCACAGCATCTCAGACGATCCAATTAAGGCAGCACACAGTGTGTTTGTCACGAGTAGCGTTGCAGGCTATATTACTGGGAACGTTCagagtttaccagtaaactaccagaaatGTTATGTCTTTCACGGATTTTATGTAATCTCTCTAaaagacatctagtggcccttttgagtccttcagattatcacaggtatCTAATCATCTCTGGGCCTCTCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1075164 lncRNA upstream 12545 11142893 ~ 11143135 (+) True G942722
TU1075161 lncRNA upstream 20302 11135140 ~ 11135378 (+) True G942719
TU1075135 lncRNA upstream 58442 11093644 ~ 11097238 (+) True G942693
TU1075133 lncRNA upstream 63595 11091869 ~ 11092085 (+) True G942691
TU1075130 lncRNA upstream 67423 11087990 ~ 11088257 (+) True G942688
TU1075378 lncRNA downstream 2083 11160478 ~ 11160744 (+) True G942915
TU1075380 lncRNA downstream 2904 11161299 ~ 11161528 (+) True G942917
TU1075385 lncRNA downstream 5741 11164136 ~ 11244458 (+) True G942921
TU1075499 lncRNA downstream 183695 11342090 ~ 11342434 (+) True G943032
TU1075512 lncRNA downstream 218111 11376506 ~ 11378471 (+) True G943044
XM_021620151.2 mRNA upstream 91081 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA upstream 91081 11039629 ~ 11064599 (+) True LOC110535262
XM_021619875.2 mRNA upstream 483688 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 484095 10666207 ~ 10671585 (+) False vapa
XM_021620141.2 mRNA upstream 516258 10631364 ~ 10639422 (+) True LOC110535252
XM_036934852.1 mRNA downstream 19937 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 19937 11178332 ~ 11497838 (+) False LOC110535264
XM_036934854.1 mRNA downstream 19938 11178333 ~ 11497838 (+) False LOC110535264
XM_036934855.1 mRNA downstream 19938 11178333 ~ 11497838 (+) False LOC110535264
XM_036934856.1 mRNA downstream 19938 11178333 ~ 11497838 (+) False LOC110535264
TU1075144 other upstream 44344 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 910174 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 2300243 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2503159 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2614813 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 2229155 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 2906153 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 2996959 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3013147 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 3152180 14310575 ~ 14314318 (+) True G946644

Expression Profile