RNA id: XM_036934853.1


Basic Information

Item Value
RNA id XM_036934853.1
length 5483
RNA type mRNA
GC content 0.57
exon number 34
gene id LOC110535264
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11178332 ~ 11497838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATCATCTACAGCTGTATCAAACCGGGTCTGAAACAACAATCTGAAACTTTGACTCCACAGTTTAAAATGTAGATATAGGCtagaatagaataaacaaacGCATTTGCATGTGAAGTGTCTATCGTTCCGTATTTCCAGCAAGAATTCTAGCAAATTTTGGATGAAAGTATGAAAGAAAACCAAAGTCACTCCATCTGAATACCGACACCTCTATTGGAGCGCGCAGTGTCTTGAGCTTTTCTGTGTTCGCTGTGACGTTAGTTACCTCCTGGCAGCCAGCAAGTCACTACCGGAGCGGAGCCGCTTGAAAGATGCACAAGTAACCAAGtaggggaagacagacagacaggggaacaCTCCCATTACCGGGCACGTTAGCTGTAAAAACTGAATATTTTCCTCTGTCAGAGCGGAAGAGTAGAATAGATTCTTACCCCGGAGCTGGGGGTTACGTTCGCGATACTCTCCCGTAATGGAAAGACTTTTAACTTGTCTCATTGCTGCGGGAAGCTTATTCCTTACAGTTCGAGGAGAAGTATTCAAAGGTGACTGTAACTTTGAGAGGCCCTACACGGCATGCGGCTACAGCCAGGGTAAGGATGACCACTTTGATTGGGAGCAGGCCAACACCAAGGTGAGGCCGTCGCCCAACCCCTGGATGCCCACAGgctcAGCCTTCATGATGGTCAACACCAGCGGACGTTCCTCGGGCCAGAAGGCCCAGCTGCTCGTGCCCCAGCTCAAAGAGAACGACACCCACTGCCTCATCTTCCAGTACTACATGGCGGGCCAGCGCGAGGGCGCCAGCCCGGGCCAGCTCAACATCTACATTAAGGAGAACAACAGTCCGCTGGGCATCCCCGTGTGGAACGCCTCCGGCCCCGCCTACCCCACCTGGCGCCAGGTGGAGCTGGCTGTCAGCACCTTCTGGCCCAACTTCTACCAGaTTGTCTTTGAGGCGGTGAGCACAGGACAACGAGGTCTACTGGCCATCAAGAGCATCATCTTGCAAGGCCACCAGTGCATGAGCACCCCACACTTCCTCCACATCAAAGGTGTGGAGGTCAACGCCAGGCAGACCGCCACCTTCCAGTGCACAGTCAACGGTCGACCACAAGACAGCCACAACCTCTGGTTACAGGGTATCGGAGGGAGACGGGCCCCGATGAGAGAGACCAAGCCGGTGAACTCCCGCCGCTACACCGCCACGTTTGACGTGGAGAACACCACTAAGGGAGACTCTGGACGATTCCGCTGCATCGTCCACTCAGACAAGGGCGTGGGCGTGTCCAGTTATGCCGACCTGACCGTCAAACAACCCCCGGTGCCCATCGCTCCGCCCCAGCTTACCGCTGTGGGTGCCACCTACCTGTGGATCCAGCTCAACGCCAACTCCATCAACGGCGATGGGCCCATCGTGGAGCGGGAGGTAGAGTACCGCACAGTGGCGGGCAGCCTCATTGACAACCAGCCTGTGGACAAGACCACGCACAAGATCGGCCACCTGGACCCTGACACGGAGTACGAGATCAGCGTTCTGCTCACCCGCCCCCTGGACGGAGGAACGGGGGCCCCTGGACCTCCCCTGAGGGCCAAGACCAAGTGTGCCGACCCCATGCATGGCCCCCAAAGACTGGAGGTGGTGGACATCAAGTCCAAGCAGATCACAGTGCGCTGGGAGCCCTTCGGCTACAACGTGACCCGTTGCCACAGTTACAATCTGACTGTCGAGTACCGCTACCAGGCAGACGACAAGGAGGAGACCCGCGAGGAGGTGTGCTACGACACCTTGAGCCTGGCGCCGCAGCACACCATCCGGAACCTGTCACCCTACACCAACGTCAGCGTCAAACTGGTGCTGAGGAACCCCGAAGGCATCAAGGAGAGCATGGACGTGGACGTGCTGACCGACGAAGATGTGCCTGGCGCTGTGCCACTCCAGTCCATCCAGGGGAGCACCTACGAGGAGAAGATCGCCCTGCGGTGGAGCGAGCCTGTCCAGACCTACGGGATCATTAAGCAGTATGAGATCTCCTACAAGGCCCTCAGCTCCTTCGACACGGAGTTTGACCTGACCAACCAGAGTGGTAGGGTGTTCAAATTCAGCAATGAGACATTCCACATGTTTGTGGGTCTCTACCCCGGTTCCACCTACTCATTCACCATCCGGGCCAGCACCATCAAGGGCTTTGGAACCCCCATCATTACCCAGTTCACCACCAAGATCTCAGCTCCGTTGATGCCAGGCTATGACCAGGAGACTCCCCTGAACCAGACAGACAGCACGGTCACCGTCCTGCTGAAGCCTGCCCAGAGCCGAGGCGCCCCTGTCAGtaagtaccaggtggtggtggtggaggaagagCGCCCCCGGCGGACGCGGAGGGCGGTAGAGATCCTGCGCTGCTACCCGGTGCCCATCCACTTCCAGAACACCACTGTGCTCAACTCCCAGTACTACTTCACGGCCGAGCTGCCCATGGGCGACATCAAGACCCCCGTACCCTTCTGCATCGGAGACAACCGCACCTACAACGGATACTGGAacgcccccctcctcccccacaaGAGCTACAGCATCTACTACCAGGCCGTCAGCACGGCCAATGGGGAGACCAAAATCGATTGTGTACGAGTGGCCACTAAAGCCGCCATAATCGTGACACAGCTCACCACTCCCTACATACGCATCGCCCCCGCGGCTGGCGACAACCAACTAACAGGGGCTGCGACCAGGAAGCCTGACGCGGTGGAGCCGGAGAAGCAGACGGACCACACGGTGAAGATCGCCGGGGTCATCGCTGGTATCCTCCTCTTCGTCATAATCTTCCTCGGCGTGGTGCTGGTCATGAAGAAAAGAAGAACCTATCACTCCTACACTTACTACCTGAAACTGGCCAAGAAGCGCAAGGAGACCCTGAGCAGCACGCGACAGGAGATGACGGTGATGGTGAACTCCATGGACAAGAGCTACACGGAGCAGGGCACCAACTGTGATGAGGCCATCTCCTTCATGGACACCCACAGCCACACACTCAACGGGAGAACTGCCTCTCCCTCGACATTCACCATGAAGACTAACTCCATCAGCACGTCCGTACCCACCTCCTACTACCCAGATCCCTTTGTGCCAACCGCCATCTTGGATGAGAACCACACCATGACCAGTGACACCAGTAGTCTGGTCCAGTCCCACAGCCACTCCTATAAGAAGAAGAGGGAGGTGGCAGATGTGCCCCCCTACCAGACGGGTCAGCTCCACCCGGCCATCCGCGTGGCAGACCTGCTCCAGCACATTACCCAGATGAAGTGTGCTGAGGGCTACGGCTTCAAGGAGGAGTACGAGAGCTTCTTTGAAGGACAGTCTGCACCATGGGACTCTGCCAAGAAAGACGAGAACAGGATGAAGAACCGATACGGAAACATTATTGCATATGATCACTCCCGTGTCCGGCTGCAGGCTATCGAGGGAGAGCAGAGCTCTGACTACATTAATGCAAATTACGTGGATGGCTACCACAGACCAAATCACTACATCTCTACCCAAGggCCCATGCAGGAGACTGTCTACGACTTCTGGAGGATGGTGTGGCAGGAGAACACGGCAACCATTGTCATGGTGACCAACCTGGTGGAGGTGGGAAGGGTGAAGTGCTGTAAGTACTGGCCTGACGACACTGAAATCTACAGGGACATGAAGGTGACCCTCATCGAGACACAGCTGCTGTCAGAGTACGTCATCAGGACCTTCGCTGTGGAAAAGAGGGGAGCCCATGAGATCCGGGAGATCCGTCAGTTCCACTTCACTGGCTGGCCAGACCACGGGGTACCCTACCACACCACCGGCCTGCTGGGCTTCGTACGCAGGGTGAAGTCGAAGACCCCTGCCAATGCCGGGCCCATGGTGGTACACTGCAGTGCTGGGGCGGGCAGGACTGGCTGTTTCATCGTGATTGACATCATGCTCGACAtggcggagagagagggtgtggtcGACATCTACAACTGTGTGAGAGAGCTGCGCTCACGAAGAGTTAACATGGTCCAGACAGAGGAGCAGTATGTGTTCATCCACGACGCCATCTTGGAGGCGTGTCTGTGCGGGGACACCACCGTCCCAGCCAACCAGCTACGATCAGTCTACTATGACATGAACCGCCTGGACCCCCAGACCAACTCCAGCCAGATCAAAGAGGAGTTCAGGactctgAACATGGTGACTCCTACGTTGCGTGTGGAGGACTGCAGCATCGCCCTGCTCCCCAGGAACCACGAGAAGAACCGCTGTATGGACGTCCTCCCGCCAGACCGCTGTCTGCCCTTCCTCATCACCATCGACGGAGAGAGTTCCAACTACATTAACGCTGCCCTCATGGAcaGCTACAAGCAGCCGTCAGCTTTCATCGTTACCCAGCACCCCTTGCCCAACACGGTCAAAGACTTCTGGAGGCTGGCGCTGGACTACCACTGCACCTCCATAGTGATGCTCAATGACGTAGACCCAGCACAGctGTGTCCCCAGTACTGGCCGGAGAACGGCGTGCACCGCCACGGGCCCATCCAGGTGGAGTTTGTGTCAGCTGACCTGGAGGAGGACATCATCAGCAGGATATTCCGTGTCTACAACGCTGCACGGccgCAGGACGGGTACCGCATGGTGCAGCAGTTCCAGTTCCTGGGCTGGCCCATGTACCGGGACACCCCCGTCTCCAAGCGCTCCTTCCTCAAGCTCATCCGCCAGGTGGACAAGTGGCAGGAGGAGTATGACGGGGGAGAGGGACGTACCGTGGTGCACTGTCTGAATGGTGGAGGACGTAGCGGGACATTCGGTGCGATTAGCATCGTGTGTGAAATGCTCCGGCATCAGCGTTCAGTCGATGTGTTCCACGCGGTCAAAACACTGAGGAACAACAAACCCAACATGGTCGACTTACTGGATCAATACAAGTTCTGCTATGAGGTGGCACTGGAGTACTTGAATTCTGGTTAGCTGTGCTGAAAGCTGCTCCCCTCATCTGTCCTACCCCCTTCAAGCCCCCTTCAAGCCCCCGCACCACAGCCCTCACAGCTTCCCTTGACACGGTCTCTTAAACCCGAGTGAATGTTGGTTACTGGAGGACAGAAATGAAGTGCTGTGTTCCGCTGGGCACGGGACAGGGTCGTGCCATCGCACTGCTATGGGACAGGGTCGTGCCATCGCACCGCTACGTGACAGGGTCGTGACATCGCACCGCTACGGGACAGGGTCGTGCCATCGCACCACTACGGGACAGGGTCGTGCCATCGCACCGATACGGATttaagaagaggggagagagggttcCCCCATTCTACTCTGAAATGGCTACGTTGACCCTGAACTTGATGAACTTTCCCCCTGCCATCTCTCATCcctgcccccccaacccctctcctctctactagTCAGTGTTactgcccccccaacccctctcctctcctctcctctagtcagtgttactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1075380 lncRNA upstream 16804 11161299 ~ 11161528 (+) True G942917
TU1075378 lncRNA upstream 17588 11160478 ~ 11160744 (+) True G942915
TU1075164 lncRNA upstream 35197 11142893 ~ 11143135 (+) True G942722
TU1075161 lncRNA upstream 42954 11135140 ~ 11135378 (+) True G942719
TU1075135 lncRNA upstream 81094 11093644 ~ 11097238 (+) True G942693
TU1075395 lncRNA downstream 3855 11501693 ~ 11541491 (+) True LOC110535269
TU1075641 lncRNA downstream 70955 11568793 ~ 11569048 (+) True G943158
TU1075669 lncRNA downstream 111398 11609236 ~ 11610212 (+) True G943185
TU1075670 lncRNA downstream 119919 11617757 ~ 11618092 (+) True G943186
TU1076102 lncRNA downstream 256855 11754693 ~ 11754932 (+) True G943586
XM_021620153.2 mRNA upstream 19937 11155680 ~ 11158395 (+) True LOC110535263
XM_021620151.2 mRNA upstream 113733 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA upstream 113733 11039629 ~ 11064599 (+) True LOC110535262
XM_021619875.2 mRNA upstream 506340 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 506747 10666207 ~ 10671585 (+) False vapa
XM_036934864.1 mRNA downstream 2134 11499972 ~ 11541498 (+) False LOC110535269
XM_036934865.1 mRNA downstream 2134 11499972 ~ 11541498 (+) False LOC110535269
XM_036934862.1 mRNA downstream 2135 11499973 ~ 11541498 (+) False LOC110535269
XM_036934867.1 mRNA downstream 2136 11499974 ~ 11541498 (+) False LOC110535269
XM_036934863.1 mRNA downstream 2138 11499976 ~ 11541498 (+) False LOC110535269
TU1075144 other upstream 66996 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 932826 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 2322895 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2525811 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2637465 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1889712 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 2566710 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 2657516 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 2673704 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2812737 14310575 ~ 14314318 (+) True G946644

Expression Profile