RNA id: XM_036934862.1


Basic Information

Item Value
RNA id XM_036934862.1
length 2950
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110535269
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11499972 ~ 11541498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaagtgtacccatgatgaaaataacaggcctcgctcatctttttaagtgggagaacttgcacaattggtggctgactaaatactttttttgccccactgtatatatattttttacaatgttTGTTAATAGGGTGAAGCGGTTTGACATGTATAGCTAAAGTTGAACCGGCATTAAGAAAGAAAGTGAAATCTTAAATGTTTGTGCTGCCATCGCTTTGGTTGCTATTAGTATCGTTGTGCTGGCAGgaggaaaaaaagctgtcctgtAAACGTCCACACCAAGCTTTTCGTCAGGTCAACAGATCCAAAGCTTAATTCATTGCGGTCattattgttaatattgtaaatatttTAAGTTGGACAGACTATTTATTCATTGAGCGTTTTTGTGAAGCACATTGAGTGACAATCATGTTTTTTTGGGGTAATATTTTTTTGGGGACTTTTTTTTGCATAATGTTGACCAGATGTATTGTAAGCCTTGTATTTATCTTGtatggaagaaaaaaaactacTCAAACTTACAAATACATACATATCTATTGAtatgtgttttttgtgtgttgtgCAGATTTTATTCTCATCCATTTTTAGCTAGCAGTGGCTAAAGTTTGAAGTGGCTGTTTAAAGAAATCTGATCCATGGATTATAGTTCTCCTGGCTCATAGACTACTTTCAGAAATCTGATccatggattacagtttctcctggcTCATAGACTACTTTCAGAAATATgagccatggattacagtttctcctggcTCATAGACTACTTTCAGAAATCTGATccatggattacagtttctcctggcTCATAGATTACTTTCAGAAATATgagccatggattacagtttctcctggcTCATAAACTACTTTCAGAAATATGATccatggattacagtttctcctggcTCATAGACTACTTTCAGAAATCTGATCCATATCCTTTGATCCATATCTGAAGACCATATCCTTTGTACATTGGCAGAAATATATTGAGGCAAGAAACTGCGAGACCCAGCATGCAACAGCATGTGATCTCACCAAATATTTCCTAATTTAACCCCACTCTGCCTCATTGGGATAATTATGGGAGATTGTCGGTCCTCTCCTCGCTGGTGGCGCTCTACAGTTTCAATGTGACGTTGTATTCTGTAACAGTCAATGGAATCATTGCTATAATATGAAGTTACATGTACTGCAAGTATATAAGgcaccacaagatggcagcagagaCCAGAACCTTTATAAACTCATTGTCAATGAACCCATGCAAGGTGAGATCTATGCGCCCATGTCGTCTCGTCTGCTGCTGACTTTCTGGTTGGAACTGCTTTGTTTCGTATTGCAAATTCATGTCAATAATAAATATGATACCTATATATTTCTAAAAAGGCCAATATGATGTGTACCAACAGAAGGATCTGCACACGTTCTCAGTTAAACCTCAAGATTTAGTTGTGACACTCATAACACATCATGCGCGAGTTACCTTTCTTGACATTTCTACATGACAGAAATTGCTGTCAGAGTGCCATCATAACGGAATTGATAGTAGATTCTCCAGTCGTTGTAATCTTTGAGAGCCAATGAATTTCGTGCTTCTAAAAACGGTGAATAAACCGTATCCAACCGCAGCTCAAGATGAGGACAGAGACCCTCCTTTCTGCGTAAGCGCAACCAACCAACAGTGGGCATTCATTAATATTTCTTTGGGAGTGAGGTATAGTATACAGATGCGTGACTACTTTTCGCTAAATAGTTTTTTATTTAAACGAGCTAATTGCAGGTGCAATTCTGGTCCTTGTTGTTTTTAACGTAGCATTTGAGATCTGTTCCAGTTTTTGATAATTTTGATGTATTGTCGCTGCTAAAAGATGCCGCAGCCGAAATCCCGAAAAATCGCCGTCCTGGGCTACAGATCCGTCGGTAAATCCTCCTTGACAATACAGTTTGTGGAAGGCCAGTTTGTCGACTCATATGACCCAACCATTGAAAACAcgtTTACAAAGATGATCACAGTGAATGGTCAGGAGTACCACCTGCAGTTGGTGGACACAGCTGGACAGGATGAATACTCCATTTTCCCTCAGACCTACTCCATAGACATCAACGGATACATTTTGGTGTATTCTGTCACGTCAAACAAAAGtTTTGAAGTAATAAAAGTTATCCACGAAAAATTATTGGATATGGTGGGTAAAGTACAAGTACCCATCATGTTGGTGGGGAACAAGAAAGATCTACACATGGAAcgtgtaatcagttgtgaagaaggcaaaGCGCTGGCTGACTCGTGGAACGCAGCATTCATGGAGTCCTCTGCAAAAGAGAACCAGGTGATGACGATGACTGGACATTCACTCCCAGAGCCATCGACGGCGGTGGAGGTGTTCAAGAGGACCATCCTGGAAGCGGAGAAAATGGAGGGGGGAGCCCCCCAGGGCAGGACGTCCTGCTCCCTGATGTAACCATCCGCCTCGGGCCCTCGCAACACGTCCCCAACCACAGCACTGGACACTGGGAAATCCCTCTACTTGAAGTGGCTAATAGCCTGTTCTCCCTCGAGAAACGTCTTCTTTTTTTCCCTATTAtttgtgttttttggggggaaggACAGAGGAAGACTTTGACATTAAGAGTAATTATCAATCCCAGCTTAGAGTACACtcgtatcacccccccccccccccccccccccaatgtctTCCCCTTCTTCTGAGAAACTAAACGTGGTGAAATATCGAGCCTTACTTCTCATTTAAAGCCTGTAATCTCATTGCTACCTGATTTCCCCCCTTCCCCTTGAAAAGTTTGTATAACAACGTATTTCATAAAGTTATTATTATGGCCACTACAGTTGGCCAGCATTCATTCACTAGTGTAGTGAATGTTGATTCCCCCCCTTTTTTTTGTAATCATTAAATCTGCATATTGGTTCACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1075512 lncRNA upstream 121502 11376506 ~ 11378471 (+) True G943044
TU1075499 lncRNA upstream 157539 11342090 ~ 11342434 (+) True G943032
TU1075385 lncRNA upstream 255515 11164136 ~ 11244458 (+) True G942921
TU1075380 lncRNA upstream 338445 11161299 ~ 11161528 (+) True G942917
TU1075378 lncRNA upstream 339229 11160478 ~ 11160744 (+) True G942915
TU1075641 lncRNA downstream 27295 11568793 ~ 11569048 (+) True G943158
TU1075669 lncRNA downstream 67738 11609236 ~ 11610212 (+) True G943185
TU1075670 lncRNA downstream 76259 11617757 ~ 11618092 (+) True G943186
TU1076102 lncRNA downstream 213195 11754693 ~ 11754932 (+) True G943586
TU1076109 lncRNA downstream 217355 11758853 ~ 11759228 (+) True G943593
XM_036934856.1 mRNA upstream 2135 11178333 ~ 11497838 (+) False LOC110535264
XM_021620172.2 mRNA downstream 3959 11545457 ~ 11548240 (+) True LOC110535272
XM_021620174.2 mRNA downstream 256581 11798079 ~ 11885766 (+) True LOC110535274
XR_002475232.2 mRNA downstream 538765 12080263 ~ 12080894 (+) True LOC110535275
XM_021620175.2 mRNA downstream 635415 12176913 ~ 12191408 (+) False LOC110535276
XM_021620176.2 mRNA downstream 635415 12176913 ~ 12191408 (+) False LOC110535276
TU1075144 other upstream 388637 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 1254467 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 2644536 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2847452 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2959106 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1846052 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 2523050 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 2613856 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 2630044 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2769077 14310575 ~ 14314318 (+) True G946644

Expression Profile