RNA id: XM_021620177.2


Basic Information

Item Value
RNA id XM_021620177.2
length 3484
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110535276
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12176913 ~ 12191408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatgactttgtgggtGTGGTAACTAGGGACAACCGCCTTATGGAAGTGACGTCAAGGTGTCATCATGTAAAGATGGCGACTCATCACAGGCAGAATGCTGCTGGGCGGAGAAAAGTGCAGGTATCCTATGTGATTAGGGATGAGGTGGAGAAGTACAACCGCAATGGGGTGAACGCCCTGCAGCTCGACCCGGCCTTGAACCGCCTCTTCACAGCTGGCCGAGACTCCATCATTAGGATATGGAGCGTCAACCAGCACAAGCAGGACCCGTACATTGCATCGATGGAACACCACACGGACTGGGTCAATGACATCGTCCTCTGTTGCAATGGGAAGACATTGATATCTGCTTCCTCAGACACCACAGTGAAAGTCTGGAATGCGCATAAGGGATTCTGCATGTCCACATTGCGAACACACAAGGACTATGTCAAAGCCTTAGCCTATGCCAAGGACAAGGAGTTGGTGGCCTCAGCGGGGCTGGACAGACAGATCTTCCTATGGGACGTCAACACACTAACAGCACTGACTGCCTCCAATAACACCGTCACCACCTCCTCACTGAGTGGGAACAAAGACTCCATCTACAGTCTGGCTATGAATCAGATGGGCACCGTCATTGTGTCAGGGTCCACTGAAAAGGTACTGAGAGTTTGGGATCCTCGAACCTGTGCCAAACTGATGAAGTTGAAAGGCCACACTGACAACGTCAAATCATTACTGCTAAACAGGGATGGCACTCAGTGTCTCTCGGGCAGCTCAGACGGGACCATCCGGTTGTGGTCGCTGGGGCAGCAGCGGTGCATCGCCACCTACCGGGTGCACGATGAGGGCGTATGGGCCCTACAGGTCAACGAGGCCTTCACGCATGTCTACTCTGGTGGCCGTGACCGCAAGATCTACTGCACTGACCTGAGGAACCCAGAGCTCCGTATGCTCATCTGTGAGGAGAAGGCCCCCGTCCTCAAGATGGAGCTGGACCGCTCAGCTGACCCCCCCACGGCCCTCTGGGTCTCCACCACCAAGTCCACCGTCAACAAATGGTCTCTGAAGGGCATTCACAATTTCCGAGCATCTGGAGATTACGACAACGACTGCACTACTCCCCTGACGCCTCTCTGCACACAGCCCGAGCAGGTTGTTAAAGGCGGAGCCAGCATTATTCAGTGCCACATTCTGAATGACAAGAGACATATACTAACCAAAGATACCAACAACAACGTTGCATACTGGGATATTTTAAAGGCGTGTAAAGGGGAAGACCTGGGAAAGATGGAGTTTGACGAAGAGATTAAAAAGAGGTTTAAAATGGTGTATGTGCCAAACTGGTTCTCTGTGGATCTTAAGACTGGGATGTTGACCATCACGCTGGATGAGAGTGACTGCTTTGCTGCGTGGGTGTCGGCCAAGGATGCAGGCTTCTCCAGTCCTGATGGGGCTGATCCCAAATTGAACCTGGGTGGACTGCTGCTGCAGGCCTTACTGGAGTATTGGCCCCGGACACACGTCAACCCTATGGATGAAGAAACCGAGATGAACCATGtgAACGGGGAGCATGAGAGCAGGATACAGAAAGGTAATGGCTACTTCCATGTTCCCCCTCACACGCCAGTCATCTTtggagaggcagggggaaggaCCCTGTTCAGgttGTTGTGTCGAGACTCAGGTGGTGAAACTGAGTCCATGTTGCTCAACGAGACCGTGCCACAGTGGGTCATCGACATTACCGTGGATAAAAATATGCCCAAATTCAACAAAATCCCATTCTACCTCCAGCCTCATTCTTCCTCTGGTGCAAAAACCTTAAAGAAGGACCGTCTGTCGGCCAGCGACATGCTCCAGGTGAGGAAGGTGATGGAACACGTATATGAGAAGATCATAAACCTGGACAACGAGTCTCAGACAGGGGCCTCGGGGAACAACGACAAGCCCagcgagcagcagcagcagcagaaggaggaggaggacgtgGCCGTGCTGGCCGAGGAGAAGATTGAGCTGCTCTGTCAGGATCAGGTATTGGATCCCAACATGGACCTGCGGACGGTCAAGCATTTTATCTGGAAGAGTGGCGGAGACCTAACCCTTCACTATCGGCAGAAGTCCACGTGAGGTCACCGGTGTCATCTTGTGCTATCCTGACCACCACCTCCTTCTTCTGGAACCAAACATGGACTGTTCAAACTCATCCAACCAGATCCATGTGTTAGTAACACAAACCTGTGCTCAACGACTCCTTGTTAGAGCCTTAAATCCCCTCAGAAAGCATTTGTTTGGTCCGTAGCCAGAGTGTCACACAATAATCACTGTTCTCCAATCAGCCAGAACACACAAGGAGAAAGGAGGGTAACTATTGTTACTGTGTACAGTGGATGGACTGAAGACATTTCCAGGGCATTTTAAGGTTCTTTGTCATTTAGGTtttattttatgacgtttccttGCCTCCTTTTTGTtacttttttcccccttttttgTAAGTAAGATTTTTATTGACATGCCCATCTTCTGAGAGAGAAGGCGTGACAACCAGCTTGAGAAAGTCACTATGCTTGGGGGTTCACTTTGACATGAGTATGTTTTAGTTTTTGTTGGGGTCCCCCCCTCCCATACATTCCTAGAACATGCTTGTTTCCGGCCACCTATCACCACCCTTCATCCTCGTCCATGGTTAGGAAAGGGTTTATTGAGGAACATTTTTTGGATAGTCAGGTGACCATTCAAACCAATCAAAGACTTGACAGAATGTAAAGACATGACAATGTTTATTGTATGTCGTGTGATATTCCTCAGTTACCTCAGTTTGGCAACTGACTGATGTATTGAAAGCTGCTGTGCGAAGCTTCTCTCACCAAATGGACACATACAAGTAAGTACACATTCCCCATACTATCTCTTTAGCGAACACTTAAATTACTGAACCTATCTTTCTTTTTGTAAATGGACTGTCATATTTTATAGGCAACTTGGCACAAGTTGTACTTCTGATCATCAGGAACATTATATTTCCTTCTTTTTTAGCAAAACCTATGTTATTTTCAAAAGGGTGCTTTCTcatgtaaaaaagaaaaaaaaatatatatatatatatatatctcattaAAATCACAAATGTCAAGAAGCAACAGGTATGTACAATTTAAAGGACCCACTGAATCAGGATGtttataggctactgtactgtatttgagAGCAAAGCTAAATTGTTGTCATTGGCATTACCCATGACAGTCTGCTGCTAAATCGGCCTATATCCATTATACACTGACAAAGTTTATGGGGGGGATATTCTAGAGGAAAGCAGAGGGAttcacaacttttttttttttatgccaaCGAAATGAAGACTGTGCTCTCAAACTCCAACAATGTGAATTTCAGTGTTATAGCAAATGTATTATAATAAAGAATTTATTTGGTTTTAATCCTAAAGAAACATTGGTTGTTGAATTCTCTACATTAAAAAAAGCTACTAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1076345 lncRNA upstream 7467 12168999 ~ 12169446 (+) True G943820
TU1076342 lncRNA upstream 12377 12164268 ~ 12164536 (+) True G943817
TU1076312 lncRNA upstream 54298 12117079 ~ 12122615 (+) True G943787
TU1076309 lncRNA upstream 61752 12114827 ~ 12115161 (+) True G943785
TU1076272 lncRNA upstream 121396 12055140 ~ 12055517 (+) True G943750
TU1076365 lncRNA downstream 60572 12251980 ~ 12252197 (+) True G943827
TU1076367 lncRNA downstream 60838 12252246 ~ 12253319 (+) True G943829
TU1076424 lncRNA downstream 128368 12319776 ~ 12343587 (+) True G943877
TU1076837 lncRNA downstream 189042 12380450 ~ 12381622 (+) True G944232
TU1077052 lncRNA downstream 435192 12626600 ~ 12626805 (+) True G944423
XR_002475232.2 mRNA upstream 96019 12080263 ~ 12080894 (+) True LOC110535275
XM_021620174.2 mRNA upstream 291147 11798079 ~ 11885766 (+) True LOC110535274
XM_021620172.2 mRNA upstream 628673 11545457 ~ 11548240 (+) True LOC110535272
XM_036934867.1 mRNA upstream 635415 11499974 ~ 11541498 (+) False LOC110535269
XM_036934872.1 mRNA downstream 1997 12193405 ~ 12246344 (+) False LOC110535277
XM_036934875.1 mRNA downstream 1999 12193407 ~ 12246357 (+) False LOC110535277
XM_036934881.1 mRNA downstream 2001 12193409 ~ 12246357 (+) False LOC110535277
XM_036934873.1 mRNA downstream 2003 12193411 ~ 12246357 (+) False LOC110535277
XM_036934876.1 mRNA downstream 2003 12193411 ~ 12246357 (+) False LOC110535277
TU1075144 other upstream 1065577 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 1931407 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 3321476 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 3524392 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 3636046 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1196142 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1873140 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1963946 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1980134 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2119167 14310575 ~ 14314318 (+) True G946644

Expression Profile