RNA id: XM_036934891.1


Basic Information

Item Value
RNA id XM_036934891.1
length 4523
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110535277
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12193405 ~ 12246357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTATGTGAAGATGTCGCGATATACAGGGGACACTCTGACACGTTTGTTATCGCTGTTATCAAAACTGCAGGGCGGAAATCTCTGGGCACTCCCAACAAGTAGTGGTCCAAGCGGTAGAATTACAACAAAAACTAATCCGCTGAAAACTCCGCCCATCTTTCATTCCCTGTCGCGGACTGGCGGAATTTAAGATCACTCAATAGTAAACTGGTTACCATGGACTTTAGCTTGTCAGTCAGTATCCATGAGGACATTATTATTTTGTTGGAATGGTAGGTAATAGGAAGCTATCTCTATCAAGGTGGTATCGGAAATTAATTTAGGGAACAAGAAGGGAGTTTACAGGCTAATTATTTGAACAGTCAGCATCCGTGCACTTACAATGGCTCCAAGGAAGAATTTCAGAAACCAAGCCAAAAAAGAGGTGAAGCCTGCAGCAGTGGTGAATAAGAATGGTGTGAAAGTGGAGGCTTCTGTTGCTGCTAGTGGTGGTGGTTTTAGCGGAACAAAGATCTTCACCTGGTTCATGGTGCTGGCCCTGCTGGGGGTTTGGAGCTCTGTGGCCGTGGTGTGGTTTGACCTGGTGGACTACGACAATGTCATCGGTAAACTTTCAGCGTATGACGCAGACGGCGACGGCGACTTCGATGTGGAGGACGCCAAAGTACTACTCGGACTGAAGGAGAGGCCGGTTTCTGTGTTGCTGAGGGAAGCCAAGGAGGATTATGCTGTGAAAGAACCAGATGCTGCCCCCACTCCGGATGATGATGctgctgtccctctccctccgATATCGGATGATTTTATCCCAGATGATAGTAGAGATGAAGCAACACATCCTTATGAGGATGAAAACAATGCCATTGACACGAAAGGAGAATTGGTTGAGAAGGCACAGCCACAGCAGACAGTAGAAGAGTCAAAGCAATACAACAACCAACCAGGCTCCTACAACAACCAACCAGGCTCCCCGGAGACAAAGGAAACagAGGCTGAATCAGTCCCAGAACCGGAGGCTGACGTGGAACCAGAGGTGGAATCTGTTCCGGAACCGGAGGCTGACGTGGAACCAGAGGTGGAATCTGTTCCGGAACTGGAAGCTGAATTTGTTCCAGAACTGAAAGCCAAAAAGAAGAAGCCCAAACTCCTGAATAAATTTGAGAAAACGATCAAGACGGAGATTGACGCTGCTGAGAAGTTACGTAAAAAGGGGAAAGTGGAAGAGGCTGTCCGGGCTTTTGAAACTCTAGTGCTGCAGTATCCTCAGAGTCCCAGATGTCGCTATGGGAAAGCCCTGGCTGAGGATGGCCTGGCAGAGAAGATGCTCAGCAACGACATGCTGCAGAAGGCCATCGGCACATACAAGGAGGCGTCAGAGCTGCCCAACGCCACACCTGACCTCATCAAGGCCACACTGAAGAAACGGGCTGAGCGTCAGCAGTTCCTCGgTCGTATGAGGGGTGCCTTGGCCACGTTGGAGAAACTGGTACAGATCTTCCCTGAGGACATGGCCCTGAAGAACGATCTGGGCGTGGCCCACCTGCTCATCGGAGACAACAACAGTGCCAAGAGGGTCTACGAGGAGGTGTTGGCCACTGCACCAAGTGACGGCTTTGCTAAAGTCCATTACGGCTTCATCCTCAAATCAGAAAACAAGATCGCAGAGAGCATCCCATTCCTCAGGGATGGTTTGGAATCAGGAGACCCTGGCACAGACGACGGCAGGTTTTACTTCCACCTCGGAGACGCTTTACAGAGAATGGGAGACGACAGTGCCTACAAGTGGTATGAGAGAGGGCACCAGAGAGGTCACTTTGCCTCCGTATGGCAGCGATCTCTTTATAATGTGGACGGTCTCAAAGCCCAGCCATGGTGGACGCCCAAGGACACTGGATATATGGATCTAGTCAAGACCCTGGAGAGGAACTGGAGGATCATCAGGGACGAGGCCCAGTCTGTGATGGATAAAACCACTGGCCTCTTTGTTCCAGAGGAGGAGAACCTCAGAGAAAAAGGGGAGTGGGGCCAGTTCACCCTCTGGCAGCAAGGCAAGAAGGCAGGGGAGTCCTGCCGCAGTGTTCCAAAGACCTGTGGCCTGTTGGAGCGCTACCCAGAGGCTACAGGCTGCAAGAGAGGACAGATCAAGTTCTCGGTGATGCAGCCTGGTACTCACGTCTGGCCCCACACGGGGCCCACCAACTGTCGCCTGCGCATGCACCTGGGCCTGGTCATCCCCAAGACGGGCTGCAAGATCAGGTGCACCAACGATACCAGGGCTTGGGAGGAGGGGAAAGTGCTCATCTTTGATGATTCCTTTGAGCATGAGGTGTGGCAGGACGCCGACAGTTACCGGCTCATCTTCATCGTGGACGTGTGGCACCCCGAGCTCACCCAGTACCAACGGCAGACTCTATCCCCCATTTAGACTGTccgacagactgactgacaggtccAAGGTATCTGTCAACCCATTCCCTCACAAGTATTGACCCCACAGCCAGCCATTTTAGGTCAAATGGGACAATTGTGACACTTGCCTCTGCTCAGTCCAGGGTGCCATTTTGGCTCCATCTTGAAGAGTTACTAAAGGCCCTCTCAGATTGGAAAAAGCCTTACAACGACCCTTGGGAACACTGACTGCTAACTGTGGTACTCGCCAAGTAGGTTTTTAGGcataaatgtgattttttttttataacgtTAAGGTGTGGGTTGAATATCATGTAGGTTGTGTTGTAAATTTGTCACAAGtgcatttttgttttcattaggGAACCGAAGTGCTATATGTCTGAAACATACCTAACATACGGTAACCGCACGAAGCTGTACTATTGCAGTTATTGACTTTACTGTTGGACACTTACTGATACTTAAAATGGATAGTTTTTCAGGTGTTTACCCCGATCTTAATGAATTTCTTACCTCAAGAAAATGTATTTGATTACTTTTGAGGTAAGTAAATGATATGGGTTAAAACACAGAAAACGATCCCTTTTTAAGATGTTGCTAAGCTAGCTAAACTTCTGCTAGCTGAAAAGTGGGAACCTAAATCTGTTGTTTCTCTAACGTGATTTGTGAATATATGTCCTGTAATTTCCATAACTTTATAAAGTAACCTGCCTCTTActgtatttggggggggggggggggcgggatTGTAATACAGACACACTGCTTATTAGgccattccatttcacttgtagGATTTTCGCATGTCTCTTTGGATCAATGAATAGGAAATCACAATGCCAAGAATGTTTTTATTGCAGAATTAATATTGCCAAGAATCTTGACTGATACATCTTATTTTTGTATGCTAACAATATACACTATTTTGAACTGCGCCTTGACCTAGGAGCGCACACACATTCTACTCAACAGGTTTGTCTTTTGGCATTTAACATCTTACAATGTGTGTATTTACATTCTTAAATGTGTCAAATATGAACACGTGACTGAAGGCATGTATTTGTCAGATACATAAACATTTTATGTTTTATAAAATTACAATTTCCCTGTGTAAAACTTGAGCAGGAGCATGTCGACTGTATGCAAGACTTGTCACACGGCATTCCATACCTGGGTCAAATACTTCCGCTGCGCTTCATTTAGTTTGCCTTGTACAATGGAGCCAATGGAACAGTCCCTAAAAGGAGAACCCCAGGCTAAATCAAGCTACACATGAAAGTATTGGACACAGGTCTACTCCATTCCATGTATAGCAGAGCTGATTAGAGGGGTTTTGCCTGACCAATGTTGTTGATATTCAAAAGAAAAATGCCAAAGCATGTTCTTCTAGATATGTTATGTAATCATTCTCTGTGAGCATTGGTAGTCAGCTTCACTGCAGCAATGAAATGCACCtctccggtgtatgtgacaataacatATATATCATGTCCAAATCAGACCGGTGGTATTATGCAGCGTTCATGTGCTATTAGAAACTCTGGACCGACAAATTCTTGGCAATCCCAGGGACTCGTCAAAACTACGAGTTTGAGGTCCCAAACTGTTCATAATGAGCTTCCAAGTGAGAAATATGTGTGGGAAACTTGGCTAACATAATTTTACCTCTACTTCAGAGGAGCATGTGAACACACATTCCAAAGGGATGGAGTCAAAACCTTAGGCTCATTGGATTGCCTTTCAACATGGTCATGGTCATTGGTGTCTTGGGGGTATTTGTGGTTATCAGTTTGTGTTATGACGATGACACATTCAAGctatctcctccatgcttcaaatGATTCCCTTAGTTACAAGGGTAACAAATCCAGCACCTTTACAAAGCCACGTTGTTTGAGATTTCACCTTTTGTGGTCCTCTGTTATGAATTGTTATCACTCATCTTAGGAAGTTAATACTTTTATGGTGTTGAAATCACTGAGCTGTTGAAACTGGCCTGCCAAATAAGTCATGTTTCTTTCAATTCTATTTTGTGTGTTGTAATCAGTTACTATTAAGAATTGTAAAGCTTTTTTTTTCCAGTAAATTAAACAATTTGGTCAAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1076345 lncRNA upstream 23981 12168999 ~ 12169446 (+) True G943820
TU1076342 lncRNA upstream 28891 12164268 ~ 12164536 (+) True G943817
TU1076312 lncRNA upstream 70812 12117079 ~ 12122615 (+) True G943787
TU1076309 lncRNA upstream 78266 12114827 ~ 12115161 (+) True G943785
TU1076272 lncRNA upstream 137910 12055140 ~ 12055517 (+) True G943750
TU1076365 lncRNA downstream 5633 12251980 ~ 12252197 (+) True G943827
TU1076367 lncRNA downstream 5899 12252246 ~ 12253319 (+) True G943829
TU1076424 lncRNA downstream 73429 12319776 ~ 12343587 (+) True G943877
TU1076837 lncRNA downstream 134103 12380450 ~ 12381622 (+) True G944232
TU1077052 lncRNA downstream 380253 12626600 ~ 12626805 (+) True G944423
XM_021620175.2 mRNA upstream 2019 12176913 ~ 12191408 (+) False LOC110535276
XM_021620176.2 mRNA upstream 2019 12176913 ~ 12191408 (+) False LOC110535276
XM_021620177.2 mRNA upstream 2019 12176913 ~ 12191408 (+) False LOC110535276
XM_021620178.2 mRNA upstream 2019 12176913 ~ 12191408 (+) True LOC110535276
XR_002475232.2 mRNA upstream 112533 12080263 ~ 12080894 (+) True LOC110535275
XM_021620187.2 mRNA downstream 18718 12265065 ~ 12274786 (+) True LOC110535283
XM_021620186.2 mRNA downstream 28935 12275282 ~ 12283257 (+) False LOC110535281
XM_036934899.1 mRNA downstream 29761 12276108 ~ 12283258 (+) True LOC110535281
XM_021620184.2 mRNA downstream 37534 12283881 ~ 12295047 (+) False rmc1
XM_021620185.2 mRNA downstream 37535 12283882 ~ 12295047 (+) False rmc1
TU1075144 other upstream 1082091 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 1947921 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 3337990 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 3540906 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 3652560 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1141203 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1818201 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1909007 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1925195 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2064228 14310575 ~ 14314318 (+) True G946644

Expression Profile