RNA id: XM_021620186.2


Basic Information

Item Value
RNA id XM_021620186.2
length 2598
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110535281
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12275282 ~ 12283258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTAGGTttcttctctcttccttttctAATATCTCTGGAACAACGCAAAGCAGAATTTGCTCTACAGCTCTCGTAAAATCCTTGTCATTTAGCAAGAAATCTGTTCATTAGTGACATTAACTCTATTTGGCTTAAGATAACACATCTAAACGGTTTCATTATCGTGTCTAATTCTGGAAACGATAAAAGGAGACTGTTTGTCGTCGTAAACGTGTTGCTAGCTAAGATTATTGCTCGACATCTGACTGTCTGAATACTGCTGCTGTCAAAGACTGAAACTCTGGGCTGCTGTCATGGATCAAATAGGGATCACTGCAGAAGGACCAAAGAGTCCATGGGGCGCCACCACTACCAAGGCGGTGTCACCCTGTTCCCTCGCTGACGTCATGAGCGAGCAGCTGGCAAAGCAACTGGATGAGGAAAGCAATGCTTTCCCTGATTCCCCAGATGTCAATGCTGCTCTGGATGCTGGTGAGGAGCCAGAAACGGACTGTGATCTGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTGcgcacagaagaaaaaaaattaaACGGGGATAGCAAACTGTCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGATAGCGACAGCTCCGAGGATGAAGTTGATTGGCAAGACACTCGCCACGACCCCTACAAAGCCGATAAGCCCACGACAACTCCAAGAAAAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTCTCTAACCAGGTGTACAACTCCCTGAAGCAACACTGCCACTCCGAGCAGCGTCGCAGTGCCCGACTGCATGACAAAAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCGTTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAGATGGGGGAAGcATGGAGGAGAAGGCTGTCCCAGATGAGTGTGTACTCAAGGTCTtcaagaccacactcaatgagttCAAGAACCGTGACAAGTACATCAAGGACGACTACCGCTTCAAGGAACGCTTCAGCAAGCTGAATCCCCGCAAGATCATCCGCCTCTGGGCTGAGAAAGAGATGCACAACCTGGCTCGTATGAAAAAGGCTGACATCCCATGCCCCGAGGTGGTGATTCTGAAGAAGCACATCCTGGTGATGTCGTTCATTGGCAAGGATCATGTGCCGGCTCCCAAACTGAAAGAAGCCATGTTGGGCTCTGAGGACATGAACAGGGCCTATTACCAAGTGCTTCATATGATGCAGCAGTTGTATCACGAGTGTAACCTCATCCACGCCGACCTGAGCGAATACAACATGCTGTGGCATCAGGGGAAGGTTTGGCTAATTGATGTAAGTCAGTCCATTGAGCCCAATCACCCTCATGGCCTTGAGTTCCTGTTCAGGGACTGCAGGAACGTGGCTACGTTCTTCCAGAAGGGTGGGGTGTCGGAAGCCATGAATGTGTACGAGCTCTTCAACGTCGTGTCTGGGCTGCAGCTCAGCGGTGACAGCGAGGCAGACTTCCTTGCCCAGATCGAGGCACTGGAGAAGATGAATGAAGACCACGTGCAGAGAAGGGGCAAGAAAACCTACTCCAGCACCAGCGACGGAGGGCCTCCCCTATTACACCACGAGGATGATTAACGATGAGACGTTAGACACCATGATTAGCTCCATGGATCCTGTTCAGTTGATTCTGTTTGAGAGAATGGGCGAGTAAACCCCCACCCAAAGGTCTTTCATCACAATGAGGGACACAAGGTCGAAAGGTCACTGCATCCCAAGATGCTACACTGGGGGCAGTGGGCTGAACAGCCTCCCATACACCTCCATGAAATGTCAACATCTCATTCCATTACTACGTTTGTAGATGAAATGGATGGGGACGTCTAAGGGGGACATGACGGATGCATCTACATGCGTACACAATTATTGCTTTTTAAAAATTAGATGGTATTCAGCATTCATGACATGAAGTTATCTTCACAGGTGAACTGGGCTCGAATGAAAAGAGCTTTGCGTTATATGAAGGGAACAAATTGCAATCCAATATTTGGTGAAGAGCCCTAGTTCGTGTCAGTTAATATTTTAATCATGAAAGGCACAGTCATGAATGAAGACTCAATGAATTGTTTTTCATTGGCACCAAGATGCATTGAGGTCCATTGATTGTACAAGGGAGCTGTGTTTTCTGTGATCTCCAACTTCAATATAATGTTGGAAATAAATGGCATAAATTTTAGTTATGCTTTGTCATTAATTTTCCTTTGCTCTGGACaaatggagcagcagcagcttgaCAGGAGACTCCAAACTGCTCTTAAACTAGGAGTTATAAAACAATACAAGCAATCTATATGTAACTATAACATGTCAATATTACTCAGTCAGCCAGTCCAACTTGTATAAAAGCCTGCAGAAACCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1076367 lncRNA upstream 21963 12252246 ~ 12253319 (+) True G943829
TU1076365 lncRNA upstream 23085 12251980 ~ 12252197 (+) True G943827
TU1076345 lncRNA upstream 105836 12168999 ~ 12169446 (+) True G943820
TU1076342 lncRNA upstream 110746 12164268 ~ 12164536 (+) True G943817
TU1076312 lncRNA upstream 152667 12117079 ~ 12122615 (+) True G943787
TU1076424 lncRNA downstream 36519 12319776 ~ 12343587 (+) True G943877
TU1076837 lncRNA downstream 97193 12380450 ~ 12381622 (+) True G944232
TU1077052 lncRNA downstream 343343 12626600 ~ 12626805 (+) True G944423
TU1077141 lncRNA downstream 455614 12738871 ~ 12739358 (+) True G944512
TU1077142 lncRNA downstream 456724 12739981 ~ 12740224 (+) True G944513
XM_021620187.2 mRNA upstream 496 12265065 ~ 12274786 (+) True LOC110535283
XM_036934886.1 mRNA upstream 28925 12193411 ~ 12246357 (+) False LOC110535277
XM_021620184.2 mRNA downstream 624 12283881 ~ 12295047 (+) False rmc1
XM_021620185.2 mRNA downstream 625 12283882 ~ 12295047 (+) False rmc1
XM_036934897.1 mRNA downstream 1586 12284843 ~ 12295047 (+) True rmc1
XM_021620188.2 mRNA downstream 86821 12370078 ~ 12384286 (+) True LOC110535284
XM_021620189.2 mRNA downstream 110116 12393373 ~ 12400089 (+) True LOC110535285
TU1075144 other upstream 1163946 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2029776 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 3419845 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 3622761 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 3734415 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1104293 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1781291 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1872097 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1888285 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2027318 14310575 ~ 14314318 (+) True G946644

Expression Profile