RNA id: XM_036934899.1


Basic Information

Item Value
RNA id XM_036934899.1
length 2323
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110535281
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12275282 ~ 12283258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCCATGGGGCGCCACCACTACCAAGGCGGTGTCACCCTGTTCCCTCGCTGACGTCATGAGCGAGCAGCTGGCAAAGCAACTGGATGAGGAAAGCAATGCTTTCCCTGATTCCCCAGAgtcgcagttgtaaatgacaacttgttctcaactgacctacctggttaaataaagTGTCAATGCTGCTCTGGATGCTGGTGAGGAGCCAGAAACGGACTGTGATCTGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTGcgcacagaagaaaaaaaattaaACGGGGATAGCAAACTGTCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGATAGCGACAGCTCCGAGGATGAAGTTGATTGGCAAGACACTCGCCACGACCCCTACAAAGCCGATAAGCCCACGACAACTCCAAGAAAAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTCTCTAACCAGGTGTACAACTCCCTGAAGCAACACTGCCACTCCGAGCAGCGTCGCAGTGCCCGACTGCATGACAAAAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCGTTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAGATGGGGGAAGcATGGAGGAGAAGGCTGTCCCAGATGAGTGTGTACTCAAGGTCTtcaagaccacactcaatgagttCAAGAACCGTGACAAGTACATCAAGGACGACTACCGCTTCAAGGAACGCTTCAGCAAGCTGAATCCCCGCAAGATCATCCGCCTCTGGGCTGAGAAAGAGATGCACAACCTGGCTCGTATGAAAAAGGCTGACATCCCATGCCCCGAGGTGGTGATTCTGAAGAAGCACATCCTGGTGATGTCGTTCATTGGCAAGGATCATGTGCCGGCTCCCAAACTGAAAGAAGCCATGTTGGGCTCTGAGGACATGAACAGGGCCTATTACCAAGTGCTTCATATGATGCAGCAGTTGTATCACGAGTGTAACCTCATCCACGCCGACCTGAGCGAATACAACATGCTGTGGCATCAGGGGAAGGTTTGGCTAATTGATGTAAGTCAGTCCATTGAGCCCAATCACCCTCATGGCCTTGAGTTCCTGTTCAGGGACTGCAGGAACGTGGCTACGTTCTTCCAGAAGGGTGGGGTGTCGGAAGCCATGAATGTGTACGAGCTCTTCAACGTCGTGTCTGGGCTGCAGCTCAGCGGTGACAGCGAGGCAGACTTCCTTGCCCAGATCGAGGCACTGGAGAAGATGAATGAAGACCACGTGCAGAGAAGGGGCAAGAAAACCTACTCCAGCACCAGCGACGGAGGGCCTCCCCTATTACACCACGAGGATGATTAACGATGAGACGTTAGACACCATGATTAGCTCCATGGATCCTGTTCAGTTGATTCTGTTTGAGAGAATGGGCGAGTAAACCCCCACCCAAAGGTCTTTCATCACAATGAGGGACACAAGGTCGAAAGGTCACTGCATCCCAAGATGCTACACTGGGGGCAGTGGGCTGAACAGCCTCCCATACACCTCCATGAAATGTCAACATCTCATTCCATTACTACGTTTGTAGATGAAATGGATGGGGACGTCTAAGGGGGACATGACGGATGCATCTACATGCGTACACAATTATTGCTTTTTAAAAATTAGATGGTATTCAGCATTCATGACATGAAGTTATCTTCACAGGTGAACTGGGCTCGAATGAAAAGAGCTTTGCGTTATATGAAGGGAACAAATTGCAATCCAATATTTGGTGAAGAGCCCTAGTTCGTGTCAGTTAATATTTTAATCATGAAAGGCACAGTCATGAATGAAGACTCAATGAATTGTTTTTCATTGGCACCAAGATGCATTGAGGTCCATTGATTGTACAAGGGAGCTGTGTTTTCTGTGATCTCCAACTTCAATATAATGTTGGAAATAAATGGCATAAATTTTAGTTATGCTTTGTCATTAATTTTCCTTTGCTCTGGACaaatggagcagcagcagcttgaCAGGAGACTCCAAACTGCTCTTAAACTAGGAGTTATAAAACAATACAAGCAATCTATATGTAACTATAACATGTCAATATTACTCAGTCAGCCAGTCCAACTTGTATAAAAGCCTGCAGAAACCACCT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08872 RIOK3, SUDD; RIO kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1076367 lncRNA upstream 22789 12252246 ~ 12253319 (+) True G943829
TU1076365 lncRNA upstream 23911 12251980 ~ 12252197 (+) True G943827
TU1076345 lncRNA upstream 106662 12168999 ~ 12169446 (+) True G943820
TU1076342 lncRNA upstream 111572 12164268 ~ 12164536 (+) True G943817
TU1076312 lncRNA upstream 153493 12117079 ~ 12122615 (+) True G943787
TU1076424 lncRNA downstream 36518 12319776 ~ 12343587 (+) True G943877
TU1076837 lncRNA downstream 97192 12380450 ~ 12381622 (+) True G944232
TU1077052 lncRNA downstream 343342 12626600 ~ 12626805 (+) True G944423
TU1077141 lncRNA downstream 455613 12738871 ~ 12739358 (+) True G944512
TU1077142 lncRNA downstream 456723 12739981 ~ 12740224 (+) True G944513
XM_021620187.2 mRNA upstream 1322 12265065 ~ 12274786 (+) True LOC110535283
XM_036934893.1 mRNA upstream 29761 12193422 ~ 12246347 (+) False LOC110535277
XM_021620184.2 mRNA downstream 623 12283881 ~ 12295047 (+) False rmc1
XM_021620185.2 mRNA downstream 624 12283882 ~ 12295047 (+) False rmc1
XM_036934897.1 mRNA downstream 1585 12284843 ~ 12295047 (+) True rmc1
XM_021620188.2 mRNA downstream 86820 12370078 ~ 12384286 (+) True LOC110535284
XM_021620189.2 mRNA downstream 110115 12393373 ~ 12400089 (+) True LOC110535285
TU1075144 other upstream 1164772 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2030602 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 3420671 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 3623587 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 3735241 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1104292 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1781290 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1872096 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1888284 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2027317 14310575 ~ 14314318 (+) True G946644

Expression Profile