RNA id: XM_036934897.1


Basic Information

Item Value
RNA id XM_036934897.1
length 1881
RNA type mRNA
GC content 0.51
exon number 18
gene id rmc1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12283881 ~ 12295047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCATCAAGTTTTCAATCGGAAATAAGATTTTGGCAGTTCAGAGAACACCAAAATCTGTGTTTTTGTTTCTTGTAGGATTTCATAAACTTCATACCGGATTATCCACATTTGGAATTCTCCCAGGAATGTAAGATGAAGAATGCCAGTATTTTGGGCTTCTGTTGGACTAACTGGAATGAAATCGTTTTCATCACTGACCAGGGAATTGAATTCTACCAGGTGCTTCCTGACAAGCGTAGCCTGAAGCTGCTGAAGAGTCAGAGCATCAATGTGAACTGGTACATGTACTGTCCTGAGACTGCAGTCATCCTGCTCTCTACCACCTTCCAGGGCAATGTGCTGCAGCCGTTTGCCTTCAAAAGTGGGACCATGTCTAAAATGTCCAAGTTTGAGATCGAGCTTCCGGTGGTTCCCAAGCCAGCCAAGCTCAATCTGTCAGAGAGGGACATTGCTGTGGCCAACATTTACGGtcagctgtatgtaatgtatctGAAGCATCACTCCAGAACTACCGACAGTCCCTGTGCTGAGGTGATCCTCTATCAGCTACCCAGGGAGGGATCCTGTAAGAAGACCAACGTGTTAAAACTCAACACCACAGGGAAGTTTGCCCTCAACGTGGTGGATAACCTGGTGGTAGTGCATCATCAGAGCACCCAGACCTCCATCATATTTGACATCAAGCTACGGGAGCCTGACTGTGCCCTGAACGTCCACCAGCCTGTGCTGCCTCCTCGCTCCATACACCCCTACAGGATTCCCCTCACAGGTCCTTCTGCTGTACCCAGCCAGCCTCCGGTGCCTTGTGAGCTCTACTCCTCATCTTGGAGCGTCTTTCAACCCGACATCATCATCAGTGCAAGCGAAGGATATCAGTGGTATCTGCAGGTGAAGCTGCCGCCCACCGTCAACCTCCTGCAGGACAAGGGCAAGCTGATCGACTTCCTCCTGCGCAGACGAGACTGCAAGATGGTCATCCTGTCTGTGTGCTCACAAAtgctcAACGGGGAAGACAAGGGGAGCTTACCAGTGGTGGCCACAGTGTTTGACAAACTCAACCAAGTCTTCAAAGAGTACCTGGAGGCAGAGCAGACCTACACTGTGGCTATGGAGTCTGGTCCCAGCCGAGGCAGCACTGCTCGGGAGAGGCCTGTCCGGACGCAGGCGGTTATCGACCAGTCCGACATGTACACACACGTCCTGTCCTCCTTCACAGAGAAAAAGGACGTATCTCACAAATTCATCATTGCTGTGCTGATGGAGTACATCCGCTCACTCAAccaggtccagatcactgtgcaGcATTACCTGTATGAGCTGGTCATTAAGACGTTGGTTCATCACAGTCTCTTCTACATGCTTCATCAGTTCCTCCAGTACCACGTCCTCAGTGACTCTAAACCTCTGGCCTGTTTGCTGCTGTCTCTAGAAGGCACTTACCCGGCTGCACACCAGCTCTCCCTGGACATGTTAAAAAGACTGTCCACGGCCAACGATGAGATCGTGGAGGTGCTCCTGTCCAAACAGCAGGTGCTGGGTGCTCTGCGCTTCATCCGCAGCGTGGGCGGCAACGACAACATCTCCGCTCGCAAGTTCCTGGACGCGGCGCTCCAGACGGCCGACCAGATGCTCTTCTACACCATCTTCCGGTTCTTTGAGCAGAGGAACCTgcgcctgagaggcagccccagcTTCAACCCAGGTGAGCACTGTGAGGAACACGTGGTATACTTCAAGCAAGTTTTCGGGGAGCAAGCACTCATGAAGCAAGCAACAGTTTGAGCTGTGACATTTCATCTTATCCCACAGCCCGTCTAACTTATTGTAAATTGTTGAAATCATGCTAATAAAGTCATTTGTACATACTCTAACAATCAA

Function

GO: NA

KEGG:

id description
K24763 RMC1; regulator of MON1-CCZ1 complex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1076367 lncRNA upstream 31524 12252246 ~ 12253319 (+) True G943829
TU1076365 lncRNA upstream 32646 12251980 ~ 12252197 (+) True G943827
TU1076345 lncRNA upstream 115397 12168999 ~ 12169446 (+) True G943820
TU1076342 lncRNA upstream 120307 12164268 ~ 12164536 (+) True G943817
TU1076312 lncRNA upstream 162228 12117079 ~ 12122615 (+) True G943787
TU1076424 lncRNA downstream 24729 12319776 ~ 12343587 (+) True G943877
TU1076837 lncRNA downstream 85403 12380450 ~ 12381622 (+) True G944232
TU1077052 lncRNA downstream 331553 12626600 ~ 12626805 (+) True G944423
TU1077141 lncRNA downstream 443824 12738871 ~ 12739358 (+) True G944512
TU1077142 lncRNA downstream 444934 12739981 ~ 12740224 (+) True G944513
XM_036934899.1 mRNA upstream 1585 12276108 ~ 12283258 (+) True LOC110535281
XM_021620186.2 mRNA upstream 1586 12275282 ~ 12283257 (+) False LOC110535281
XM_021620187.2 mRNA upstream 10057 12265065 ~ 12274786 (+) True LOC110535283
XM_036934891.1 mRNA upstream 38496 12193427 ~ 12246347 (+) False LOC110535277
XM_021620188.2 mRNA downstream 75031 12370078 ~ 12384286 (+) True LOC110535284
XM_021620189.2 mRNA downstream 98326 12393373 ~ 12400089 (+) True LOC110535285
LOC110536550 mRNA downstream 469579 12764626 ~ 12794372 (+) True LOC110536550
XM_036934900.1 mRNA downstream 512529 12807576 ~ 12877501 (+) True LOC110535287
XM_021620193.2 mRNA downstream 631564 12926611 ~ 12927478 (+) True LOC110535289
TU1075144 other upstream 1173507 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2039337 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 3429406 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 3632322 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 3743976 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1092503 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1769501 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1860307 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1876495 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2015528 14310575 ~ 14314318 (+) True G946644

Expression Profile