RNA id: XM_021620196.2


Basic Information

Item Value
RNA id XM_021620196.2
length 3154
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110535293
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13046306 ~ 13094507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTCCACCCTTTTTTAATATCTCTGACCAAACTCAGAAAAGAGTAGCTAGGTTGCTAGCGTTAGCTATAGCTATTGACTTGGTGCATTGGGTTGTTTTAAACCAAAGAGAATGGCCAAGCAGCTAGAAACGGGTTTGGATGGAATGTAGTTTTTTGTGTCACGGGGGTGTTTGTTGTGTAGTGTACTGACCGCGGTGGGGAGGTATGACTTGGGTGTTGACGCAGTACCTAAACCAACGGAATTTGCAATACCAGCATAGACAAATTGGGATGTCAATGAAGCAAGTGCATCGGGCCTGAGCACGGAGCGCCGACGATGCTAGGGCTACCATGGGTAGCGTCACACTGCGCTATTTCTGCTATGGCTGCCTCTTCACCTCCGTGACCTGGTCCGTCCTACTCTTCCTCTACTTCAGCCTCGGCCAAGACGGCGGCCGGCCCACCTTCAGGTATGTGCCCATCCAGGGGCCCCAGGCCCACCGCTTCCAACCCCGTTTCTCCAAGGGCCCTGGAGGAGGGCCAGAACATGGCATTACGGCAGTCCCTGCAGCTGGAGCAGGAGGCAACAAGCAGGCCGATCTCTCTCCTGAGATGGGAATGATTTTTAATGAGCAAGACCAGGAGGTGCGTGACATGGGCTATCACAAGCATGCTTTCAACGTACTGATCAGCAATCGACTAGGCTACCACAGAGACCTCCCCGACACTAGGGACGACAAgTGCCGAGACATGATCTATCCTCTGTCCCTCCCCGCGGCCAGCGTAGTGATCTGCTTCTTCAACGAGGCGTTCTCCGCCCTCCTGCGCACCGTGCACAGCGTCCTGGATCGCACGCCGGCCTACCTGCTGCATGAGATTATACTGGTGGATGACAGCAGTGAACTAGCTGATCTGAAGGAAGATCTTGACAGCTATGTCCAGCAGCACAAACTCCAGGTCAAGGTCAAGGTGGTCCGCaacgagaagagagagggattgatCAGAGGGAGGATGATAGGTGCTTCTCATGCCACCGGGGAGGTGCTTGTGTTCCTGGACAGCCACTGTGAGGTGAATGAGGCGTGGCTGCAGCCCCTGCTGGCTCCCATCCAGCGCGACCACAAAACAGTGGTGTGTCCCGTCATCGACATTATTAGCGCTGACACCCTGGCCTATAGCCCCTCCCCCATTGTCCGGGGGGGCTTCAACTGGGGGCTGCACTTCAAGTGGGACACCGTGCCCGCCTCAGAACTCAACAGTCCCGACGGAGCAGTGGGCAGCATCAGGTCTCCCACCATGGCAGGTGGTCTGTTTGCCATGGACAGGAAGTACTTTAACGAGCTCGGCCAATACGACAGTGGCATGGACATCTGGGGTGGTGAGAACCTTGAGATCTCCTTCCGGATCTGGATGTGTGGTGGCCAGCTCCTGATCATCCCCTGCGCGCGGGTGGGTCATATATTCCGTAAACGCCGGCCTTACGGGTCACCCGGAGGTCAGGACACCATGGCCCACAACTCCCTGCGATTGGCCCACGTATGGATGGATGAATACAAGGAGCAGTACTTAAACCTGCGGCCAGAACTCCGGGAACGTGCCTACGGTGACATCAGCGAGCGGCAGGCGGTGCGCCAACGGCTGCAGTGTCGCTCTTTCAAGTGGTACCTGGACACCATCTACCCCGAGATGCAGGTTGCCTCGCCCCACAACAAGCCCCAGCAGCCTGTGTTCGTCAACAAGGGCCTCCGCCGGCCAAAAGTGTTGCAGAGAGGCCGGCTGCGGAACCTGAAGGCTGACAAGTGTCTGGTGGCCCAGGGGAGGTCCACACAGAAGGGGGGTGCCGTGGTGCTGAGGTCCTGTGACACTCACAACCCAGAACAGgAGTGGGCCTATGATGAGGAGCACGAGTTGATCCTAGCCGGCCTGCTGTGTCTGGACATGTCGGAGATCCGCTCGTCTGACCCACCCCGCCTCATGAAGTGTCACGGCTCAGGGGGCTCCCAACAGTGGACCCTGGGGAAAAGCAACCGGCTGTATCAAGTCTCAGTGGGCCAATGCCTGGCCGTGGTCGACCCAATCAGCCCCAAGGGATATGTTGCCACGGCAATCTGCAACGGCTCTCAGTCCCAGCAGTGGCAGTTGGAGGGCTGATGTTGATACCCCAcgactagttacataccagacgcTGACTGCCCCCCCCCCTGGATGGGGGGAGTACTGCATGCTGCTACAACTAAGCAAGAGAGGGATGGAACTAATTATACGGACTGTGTTCTTGAAGAAATTAATGCTGTTTATCTTCAGAACTGCTTCCGGCCTGACGTGCACAAAGTATGGAGCTCTAAGTGGGTACGCTATATGTACTGTAGTCATTCGTATGCCTGACTTCCCCCTCTTGAAAATTTGTATTCCATGTCCTGTTTTAGATATTATTTTTTTACGATGCATCATGcaaattatttttaatttaatCCAATTTGCACAGCACTCTTGCATTAGACAATTCAGAGAAATGTTTAATCTTGTATAAGTCCCAAACAAGTGTTTTACTAAGAACAATGGACTGCCAGTGTTAGAGGTTTTAGAGTTAAATTGCATTTTATTCTGTACTTATTACAATCTGATATTAATTGCTATGACATACAGTACTGCATGTTATTTAGTTGACATTTCTTTGGGAGTATCTTTCTGTTGTACAAATATTTTGATCACTGGAGTTTGTTTTTGAAGTTATGTATTTTTCATGCCCTTGAAATGTGCAAGGCAACTTCCTTAATACTGTATTGATAGGCTACACTGTGTTAGCTCTACATCAGGTATATTGACCAAGTGATGGATAGTTTGTGCAGTCTACGTAAATCATGTCGAATAGGTTAAATAGAAATGGAATTTCCTACAGTATCTAGCGGTCTTGGGTCATGCCCACAACACTAGCAAAATCATCCATACTCACGGCCTGCTCTGCACTGTACTGGTGAGCTATGATGGTTGAACAAGATCTGGCAATGATTTGAGTTCTAGTTTTTCCCTTATCCAAATGTCATTTCTTAAGTTATGCGGTGCAGTTTTGTATTAGTTATTCTCTTTTGCAATGAGGCAACCAACTAAATGTTTATTTGAAGTATGAACATCCCTTTTGACACATTTACAATTTGATTAAAAGTCTTTGTCAGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1077247 lncRNA upstream 127044 12912440 ~ 12919262 (+) True G944609
TU1077191 lncRNA upstream 144131 12900666 ~ 12902175 (+) True G944560
TU1077142 lncRNA upstream 306082 12739981 ~ 12740224 (+) True G944513
TU1077141 lncRNA upstream 306948 12738871 ~ 12739358 (+) True G944512
TU1077052 lncRNA upstream 419501 12626600 ~ 12626805 (+) True G944423
TU1077318 lncRNA downstream 22115 13116622 ~ 13118471 (+) True G944675
TU1077523 lncRNA downstream 193917 13288424 ~ 13291231 (+) True G944876
TU1077694 lncRNA downstream 389166 13483673 ~ 13483980 (+) True G945040
TU1077697 lncRNA downstream 393971 13488478 ~ 13488711 (+) True G945043
TU1077700 lncRNA downstream 396713 13491220 ~ 13491487 (+) True G945046
XM_021620193.2 mRNA upstream 118828 12926611 ~ 12927478 (+) True LOC110535289
XM_036934900.1 mRNA upstream 168805 12807576 ~ 12877501 (+) True LOC110535287
LOC110536550 mRNA upstream 251934 12764626 ~ 12794372 (+) True LOC110536550
XM_021620189.2 mRNA upstream 646217 12393373 ~ 12400089 (+) True LOC110535285
XM_021620188.2 mRNA upstream 662020 12370078 ~ 12384286 (+) True LOC110535284
XM_036934924.1 mRNA downstream 352177 13446684 ~ 13814449 (+) False dpp6a
XM_036934926.1 mRNA downstream 403746 13498253 ~ 13814449 (+) False dpp6a
XM_036934925.1 mRNA downstream 550782 13645289 ~ 13814449 (+) True dpp6a
XR_005034812.1 mRNA downstream 622220 13716727 ~ 13716783 (+) True LOC118937473
XM_021620204.2 mRNA downstream 729477 13823984 ~ 13848726 (+) True mcur1
TU1075144 other upstream 1934970 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2800800 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 4190869 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 4393785 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 4505439 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 293043 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 970041 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1060847 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1077035 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 1216068 14310575 ~ 14314318 (+) True G946644

Expression Profile