RNA id: XM_036934924.1


Basic Information

Item Value
RNA id XM_036934924.1
length 5583
RNA type mRNA
GC content 0.46
exon number 27
gene id dpp6a
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13446684 ~ 13814449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTTATACATGGAATGTCTATTTTACTATAGGCTACATCAGCAGCGCAGTAATCTGTTCCCTCCGGTTTATACTGTAGTTTCGCGTGCCACCTCTCGACAGAACAGCGAGTAGAATGGAAAAGTATAGACAGTAGCATTTCCCAGCCCATGCGTTACAAACCAAGGCTGGTGTCAGCACAACGTCTATCCTTCTTCGATGATATTTTCGTACAGCGGTCACACCATTGACTGTAGCCTATATAAAGGGTCACGCAGGAGTTTTACTTGTCAACCATGAACCAAACCGCAGGAGTAACACAGACATACCGGAGGTGTTCTAAAGCAGGAAAGGAGCTGGTGGGGAGTAACCCTCCTCAGAGGAACTGGAAGGGTATTGCGATCGCCCTGCTTGTCATTCTGGTCATCTGCTCCCTGATCGTCACCTCGGTCATCCTGCTGACACCAGGCGAGGATGACAGCTTGGCCCTCAAGGGGAAACTGACCGTGGGGGACATCTTCAGGAAGGACTTCAAGGTTCACGACCCTGAGGCCAAGTGGATCAACAGTAATGAGCTACTGTATCGCACACGTGAGGGGGATGTTGTCAGGCTCAACATGGAGACGTATGAGAGGACGGTACTGGTGCACAACAAAAAGTTTGAAATGTACAAAGCCAGCAAGTATGAAGTGTCTCCTGACATGAAGCATGTGCTGCTCGCCTACAACGTGGCACCGGTGTACCAGCACTCGTTCACTGCCTTCTACATCATCTGCAGCCTGGAGACTCCGGAGACATGGAACCTGAATCCTCCAGAGGTACGGAACGCCCAACTGCAGTACGCAGGCTGGGGACCCAGGGGCCAGCAGCTGATTTTTATTTTTGAGAACAACATCTACTACCGTTCGACGGTGGAGAGCCGATCGATCCGTCTGGTTTCCACCGGCAAGGAGGCGGTCATCTTCAATGGGCTCAGCGATTGGCTGTACGAAGAGGAGATCTTCCAGACCCATATTGCCCACTGGTGGTCTCCGGATGGTGCCCGGCTGGCATATGCCACCATCAATGACACTATGGTGCCCAGGATGGAGATCCCTATGTTCACAGGAACTACTTACCCTACCGGCAGGGAGTATCACTACCCTAAGGCTGGGGAGGAAAATCCAGTCATCTCTTTGTATGTGGTCAACCTGAACGGGCCCCTGCACACCATCGAGATGAGGAGACCTGAAGACCCGAGGATGGGAGAGTACTATGTCACCATGGTGAAATGGGCGACTACCACCAAACTGGCAGTGAATTGGTTAAACAGAGCCCAGAACATATCCATGCTGACATTGTGTCAGGCCACCACCGGTGTCTGCACgaagAAACATGAGGACGAAAGTGAAAGTTGGCTACACAGACAGAATGAGGAGCCGCTGTTCTCCAAAGATGGTCTGAAGTTGTTCTTCACCAGAGCCATCCCACAGGGAGGCAGgggcaagttcttccacatctcCATGTCCATCACACAGcccaacactagcACAGACACGCTGCAGTCCATCACGTCTGGAGACTGGGACGTCACCCAGGTCCTGGCCTATAACGAGAACATCCAGCTAATATACTTCTTGAGCACAGAGGACGATCCGAAACGCAGGCACCTCTACAGTGCGGACACAGTGGGCCCTTTCAACAGACGCTGTCTCTCCTGTGACTTCTACGAAGGTTGTGGCTACGTTAGAGGTTCCTTCAGCCACAGCATGAGCCTCTTCCTGCTTAGCTGCAAAGGCCCTGATGTCCCGTTTGTAGCAGTGTACAgcacacaggacagacagaAGGTGTTTGACCTGGAGACCAATGAGAATCTGAGGATGAGGCTGGACTCCATGCAGATGCCCCGCGTGGAATACAAGGAGATCAACATTGAGGATTACACACTAACGATGCAGATCCTCAAACCTGCCAGCTTTGTGGACTCATCGCACTATCCTCTGCTCCTCCTTGTCGATGGCACCCCCGGTGGCCAGATGGTGTCAGAGCAATTCCACATAGACTGGGCCACGGTGCTGGTGAGCAGCTTCGGGGCAATGGTGGTTCGCTTTGACGGGCGGGGCAGTGGCTTCCAGGGGACCAACCTGCTGCACCGCGTCCAGAGGAAACTGGGCGTGTTTGAGGAGAAGGACCAGCTGGAGGCCCTCAGTATTATATCTAAAGAGCCATATGTTGACAAGACCAGGATTGGAGTTTATGGCAAGgtGTATGGAGGCTACGTGACCAGCCTGTTACTCAGCGCCGAGGATTCCCTGGTGAAATGTGGTGCGGCTCTCTCACCCATCACGGACTTTGACCTATATGCATCAGCGTTTTCAGAGAGATACTTGGGACAGCCCAAGCCTGACCCAAGAGCATATGCGATGGCCAATCTAGCACACAGGGCATCTCAGTTCTTGGACAAGAAGTTTCTGATTGTTCACCCAACAGCAGATGAAAAAGTGCATTTCCAGCACACAGCGAAATTCATCGCCCAGCTGATCAATGAAAACGCCAACTACACTCTGCAGATCTACCCAGACGAGGGCCACTTCATCCACAGCGAGGCCACGCGGCAGCACCTCAGCCAGTCACTGGTCAACTTCTTCGAGGAGTGTTTCCGGCTACCGGACAACGTGTTCGAGGAGATACTGGAGGAGGAGATCGAAGAAGAGGGTTAGCCTGGGCAAAACCAATCCCCCCAAACCAGAGCTCCAGTCCGTGCCCAAGCACAATGCCAGCCCCCATACCTGGTTTCCACAATCCACATGATATGCAAGCTCCTCTTGGTTTAAACTTTCTTTGgccctttttttgttttgttttcacctTATGTGATTCCCCTGCATTTCAGCATGATCATCCCTGAGACTGACACGTTGCAGATCATCCCTGAGACTGACACGTTGCAGATCATCCCTGAGACTGACACGTTGCAGATCATCCCTGAGACTGACACGTTGCAGATCATCCCTGAGACTGACACGTTGCAGATCATCCCTGAGACTGACACGTTGCAGATCCTCCCTGAGACTGACACATTGCAGATCATCCCTGAGACTGACGCGTTGCAGATCATCCCTGAGACTGACGCTTTGCAGATCATCCCTGAGACTGACGCTTTGCAGATCATCCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTGCATCGTTGCAGATCAACCCTGAGACTGACACGTTGCAGATCATCCCTGAGACTGACACGTTGCAGATCAACCCTGAGACTGCCGCGTTGCAGATCATCCCTGAGACTGCCGCGTTGCAGATCATCCCAGAGACTGCCGCGTTGCAGATCATCCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTTGTGTTGCAGATCATTCCTGAGACTGCCGTGTTGCAGATGCTTGCTTATCTCCTCATCCCGTTTTtgtcctcctactcctcctcttcttcacctTTTGAGTCACCACGACTCCACCAGAGACCATCTGCAGCCATTTTGTTGACATCGACACAATGAATACAACTTTATGATGGAGGGATCATTAGCTGACGTCATATCTGGAACAGCGGTCGTGTCAGGAATAGGCGTGCTCCTCGGATTCCAAATGACTGGTGAGAAGGAGGGAACATCAAACTCCACACGCAAACTTTACCAGTCAGTGAGGAGAGGAAAGACTTATAGCACAAACTTTGGGGTCAAAGTTACAGGCGCCACATGGGATTTTATGGGTCAAACTGGTTCCAGCCCAGTGTCTGTGGGTCGAGGGTAGGGTGTCTGCTCCTATTTTTAAAATCGTGAAAATACATTTTCATGTTGAACTGTGCTTGTGTATGTTATTCCTCTGTAAAGTAGCACATGAAAAACATTCCCTTCTTTGGGTATTGATACTTCGTTTTTTCAGTGTTCAAGTTTGTCCTGATCTTGGAATCTTCTTGTAGCCGCAAGTATGTATTTAAATGGTGTAGACTCCGTGTCATGAAAAGAAGAGAAGGATGTGAACAGAATCACCGGTTTGTTTTGTTACAAAATGTTCTCCTCATTCTTTGCTTATTTTATAATACTCCCACCAGTCCTATGGAAATTGAagcatatatattatattttagtcACTGTGCCTTACTTTGGGAGTGAGCAGTCCTTTTTATGGACTCCTTTTGTGAAAACTAAATACAACATGGCTCATTGTAAATAAATGTTCTGCTGATCATGGCACTAACTACTGTTGGTTAAACCTTCACTCTAATCTGTGAACACTTTGTAATGTTGTCATAGAGTAGGTATGGCATTATATCAACAGTCAAGTAAGAAATGGTCTTCTTCAGTTCCAAATATACCCAATTGCCAAAATAGATGTAAACAGTAGCTGCATGTATCTGCACATTATTTTACAGATGTTCAAATGGTAACGAAATGGTTTGTCAAGCTAACAACCACATAAAATTATGTTTAAGTAAATGGCTATTGAAGTGCCATTACAACCATTCTCAGTATTAAGTCAATTGGTGGGTTTGAGGTGCCAATGTAGAATTGGTGTTGTTTTATGGCAAAAAGTAATACATTTGTCTATAAGGTAATTAATAGCTTAGAATCATTATCTCAATCTTTACAGGATGAAATACAAAGGATTATTTGTATCTTTTTTTAGGTTGGACTGCTATCTAAAAACGTGAATTCTTGAGGCACAAGTCTGCATTTTATCTGAACGATCATTCTGTTACTTTGTCAATGCATGTTATCAAGTTATTTGCAACTCAATGCGATCTGTGATAGCTCTGTTTCAAAATAGTATTTTTTACATCGTGAATGTTCCGTACTGGGTTGAATTACATTTACAGTAGTATCATGATTGAGATCCCAGTCTCTTCAGCTTGATGTGTAAATGTTACTCAAATATCATTTGTCTTTTAATAGCTGAGTGTTATTTGTGCATAAAtgcattttgaaagttacatttgAATATACATTTCCCCCCCTTCTGTTTCAGTCCTTGGGTTGAGTTTAAAGTGGACTTTGCGATAGTGACATTTCTGACATTTCTGAACGTGAAGATGGACTTTTGCCAAGTAATCCAAAATAGTACAAGAGACAACGTGGCAGTATGTGGCATGGGGGTAAATGTtagaataaaatgtattttatcattGTACTCTGTAGTTTATCTATTTTGGTTGTTTTTGCAAAATTGTGAATGTTCTCTACTTCATGTTAATTTATCCACTTTATtgtaaaagacacaaaaaaaaaTGCATCCTCAAGCGTTTACTCAAATCAACCAAATGTCTTGTTGTATAGTAAAACAATGAGATGAGAAATCAAGCTGCCAAAACAAAGCTTCTGGGTTCTATTACTGAACAAGTCCTCATTACCTTGCCAGTCTGGATAGATTGTGAAATGCTTTTAGGTTTGTTCAAAAACATAGACGTGGTACATAGTCATTCAAACAACTTAATTGTCATCAGTCACTTTCATCTTTGTAAAACCATTACCAAAACATACATTTCTGTAAATTAAAAGTTTGATTTGTACAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1077523 lncRNA upstream 155453 13288424 ~ 13291231 (+) True G944876
TU1077325 lncRNA upstream 325531 13027187 ~ 13121153 (+) True G944679
TU1077318 lncRNA upstream 328213 13116622 ~ 13118471 (+) True G944675
TU1077360 lncRNA upstream 362019 13084392 ~ 13084665 (+) True G944714
TU1077247 lncRNA upstream 527422 12912440 ~ 12919262 (+) True G944609
TU1077960 lncRNA downstream 11092 13825541 ~ 13825893 (+) True G945298
TU1077968 lncRNA downstream 49095 13863544 ~ 13869217 (+) True G945306
TU1079029 lncRNA downstream 117238 13931687 ~ 13931898 (+) True G946278
TU1079031 lncRNA downstream 120603 13935052 ~ 13935276 (+) True G946280
TU1079055 lncRNA downstream 138025 13952474 ~ 13952696 (+) True G946304
XM_021620196.2 mRNA upstream 352177 13046306 ~ 13094507 (+) True LOC110535293
XM_021620193.2 mRNA upstream 519206 12926611 ~ 12927478 (+) True LOC110535289
XM_036934900.1 mRNA upstream 569183 12807576 ~ 12877501 (+) True LOC110535287
LOC110536550 mRNA upstream 652312 12764626 ~ 12794372 (+) True LOC110536550
XM_021620189.2 mRNA upstream 1046595 12393373 ~ 12400089 (+) True LOC110535285
XM_021620204.2 mRNA downstream 9535 13823984 ~ 13848726 (+) True mcur1
XM_021620210.2 mRNA downstream 62352 13876801 ~ 13883235 (+) False LOC110535301
XM_021620208.2 mRNA downstream 62358 13876807 ~ 13883235 (+) False LOC110535301
XM_021620211.2 mRNA downstream 62727 13877176 ~ 13883235 (+) False LOC110535301
XM_021620213.2 mRNA downstream 65010 13879459 ~ 13883235 (+) False LOC110535301
TU1077607 other upstream 51809 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 2335348 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 3201178 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 4591247 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 4794163 8651504 ~ 8652521 (+) False G940376
TU1079178 other downstream 250099 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 340905 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 357093 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 496126 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 503559 14318008 ~ 14318623 (+) True G946643

Expression Profile