RNA id: XM_021620210.2


Basic Information

Item Value
RNA id XM_021620210.2
length 3603
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110535301
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13876801 ~ 13883235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatgtgcttttttgtctttaaggttagggttaggcataaggttagcagtgtaacattttagaaataggcggggtttatggctgtggtaactagtgacgacccagACAAGGGAATAGTTTGAGAAGTAGGCGTCTGGCATGTGCAGATATCTATGGTTTCAATACACTGCATTTCCTGTCAATTTAGGTGCAACTAGCATACTAGCTATTACAGATCTAACATGACTGTGCGACAATTCAGGAAAAAAATCGCTAGCTAACCTCAAAATAAACAAAACCGAACCAAAAGAAAGGTGTAGGTTACATGACTGAAAACAATGCAAAGCTAGCAGCAACGCCGGGAAGTGGTGCGTTCATGCTACGCATGTCGTCTGTTTACAAGCTAACATGGACCTTGGATCAATGCTGTACAACAATTTGAAAGATGTATCATGGAGCACGACGTCTTTACCCTTAGATCGACTTGTCAGTGTTTATAGATTGCCGCAAATTGTGAAGTTGGACAGTGGTGAGTTGGTGGACGTCTTACGAGACAATGACTACCTCTTGATTCATTCCTGTCGTCAATGGACTACAATCACTGCACACAGTCTGGAGGAAGGCCATTATGTCATTGGGCCCAAAATAGAGATCCCGGTACATTATGAAGGTCAGTTTAAGCTGCTGGAGCAGGACAGAGATGTCAAGGAGCCGGTGCAGTACTTCAACAGTGTGGAGGAGGTGGCCAAAGCATTTCCCGAACGGGTGTATGTCATGGAGGAAATTACGTTCAATGTGAAGATGGCTTCGGGCGAATGCAACGAGGACACGGAGGTGTACAACATCACACTAAGCACCGGTGATGAGCTCACCCTCATGGGCCAGGCAGAGATCCTGTACGCCAAGGCGTCCAAGGAGAAGTCTCGCTTCAACACCATCTTCAAGAAAATCGGCAAGCTCAACTCCATCAGCAAGATCGCGAGCCGTAGCAAGATGCCCTGCCTCATCTGCATGAACCACCGGACCAACGAGAGTGTCAGCCTGCCCTTCCAGTGTAAGGGTCGCTTCAGCACCTGCAGCCCCCTAGAGCTTCAGATGCAGGAGGGGGAGCACACCATCCGCAACATCGTGGAGAAGACCCGGCTGCCCGTCAACGTCAGCGTGCCTGGCAGCCCACCGCGCAACCAGCATGACGTCCACCTGATCCGCGAGAGTCACCGCTACAAGTTGGTCAACATCCAGACCAAGACGGTGGTGGTGGGCTGCGTGCTGCGCAGTAACAAGATCATCCCCGTCCACTTCCCGCTCCACATGGCCTCCATGCCCAAGTTCATCATCCCTGAAGGGTTGCTTCAGAACGAGCTGTGGCTGGACACCATGGTGCACCGCTGGTTCACCTACTGCCAGGAGCAGTTTGACATTGACGACTATTCCCGTGCTGTGCGTGATGTCAGGACCGACTGGAATGACGTTGATGGGAGGAGCCCCAAGAAGAGTAGTGGTGGTAGCAGCAACGGCTGCCCCTCGCACATGCCCAGCTCTCTCACGTACGCCCGTGACGAGCTTACCCAGTCATTCCACCGGCTCTCGGTGTGTGTCTATGGCAACAACCTGCACAGCAACAGCGAGGTCAACCTGCAGGGCTGCATGACGCTGTGCGGAGACTGGGTGCTCCTGCCATCCGAGGGCGTGCTGGCTGATTCAGTTGACACAGAGTACCTCTTCCCTGAGCTGCTGGAGGACATGAGCAAGTCGGATGTTCCCTACGAGGAGCTGTGGCTGGACCACTTGAGATCAAGTCGGGGAAGAGGAGGGCACAGTGTAGGCGGCGAGGATCCAAGAAGCACCAGCAACACCATCGCCACCTCCATGGCTGTCATATCATACCCCGCCTCCTCCTCTCATATGGGTCCAATGGTCAGCTCTGAAATCTGTCTAGCTCCGCCCCCAGTCCCACCAAAGTCTGAAGCTGTGAAGGTAGAATGCCGTCATTTGAACGCCCCTCCCATTCCCCCCCGAAGTTCCAAGCAGATGATGTCCACCCCAACGCCGGCTGTAGATAAGGCTCGGCAGACGGAAACGCGCTCTCCAAGCCCCACTCTCTCCTATTATTCCTCAGGCCTACACAGCATTGGAGGAGAGAATGAAGTGACCGAGGCAGACGAGCAGAACCACGTATGTTACCCCTGTAACTGGGTCAAGGGCAACAAGGAGTGCCTGACAGCATCCCACGTGAGCCCAGCTCTCGACGGCGTACTCTCCTGCCCTTCTAGACTATCGTGGCCCAACGACTTCTGTGGAGGGGATTCTCAAAGCATGGAGGAGTTTCTGCCCATCCCCTGTCGAAGTTACTACAGCTATCCCAGAAAAAGACCCTCTGGCACACTCAAGTCGCCATGCCTTTTGGACTttgatagaaaagagcagaagggCGGTAGCGCCATCCCCTTGAAATCCCACAAAGCCTCATACACTAATCAGTTTTGCACCAAGTCGTTGAGCTACACCCTGGAAATGTACAGAGACAATATGATAGACGAATGCAACACTAAACAAAGCCTATCGTGCCCCATCTTGCCACCGAGGACGCCCAAATCAAACGAGACATGTAAAGATTCTGTCGAAGATACGGCACCGGACACTCTAAAGTGCCTGGTCAGCCAACAACACGACCAGGTCACAACGACAGAAATATTCTCCATCTCCTATCCCCCCCTACCGCCACTGTCCTCCCCCTCCCTGCCAGTGCCCGGAGGACAATGGCAACCACCCACCAACCTCTCTGGACTTTCCGTCGAAGAGGTGTCCAAATCGTTACGGTTCATCGGCATTTCCGGTGACATTGTGTCTTCGTTCGTGACAGAGAAAATCGATGGGAATCTACTTCTGCAGCTTACGGAGGAGATTCTGACGGAGGACTTCAAGTTAAGCAAACTCCAAGTGAAGAAACTCATGCAGTTTATTAAAGGTTGGAGGCCTAAAATATAGCCAAACCCTTTAACAAAATGTTTTGTACTCAAATGCTATGCACATCCAGAAATGATTTTGGGGGTTATTTCATATAGCAGAAGTTGGCCAGATGAAACAACTCGGCACATTCAAGTTCTTTGAGAAGGATAACACATGAATTGGGCATAGTATATAAATGACTATATACCCTCAATAACCCACACTCAACGTTAAGCTTTCTTGTTAAACCAGAAAACCAAAGGCAGTCGAAGGTGGCTGCCTAACTTGTCAATCCAGCTCTCCGAAGTCCAACCCTGGTAATCATTACAGTTGTCTATGTAACagggatgtgtttgtgtgttaactCGTCATTATATCTGTTTGTACTCTTTAGGGACATTCCCTCAACTCCGTTACTATTTGCTTTAACCCAAAGCCTTTCAATAGAAGTAATGAGGTTATTCATGAAAGTTTGCGATCCAAGCGATAGCATTCAACTAAtttatgcgtgtgtgtgcttcTTGTAATGCTGAATTAATATGCAAGTAATAACCACCAATACAATAACTTCATATTCCACATAATGAAATGCACTTGAGTAAAACCACCGTTGCCAGTACAAATAGACTGTGAATCAACTCATGACAAGTGTCCTTAAAtctatatttcattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1077968 lncRNA upstream 7584 13863544 ~ 13869217 (+) True G945306
TU1077960 lncRNA upstream 50908 13825541 ~ 13825893 (+) True G945298
TU1077921 lncRNA upstream 111352 13763786 ~ 13765449 (+) True G945259
TU1077862 lncRNA upstream 203227 13673307 ~ 13673574 (+) True G945200
TU1077706 lncRNA upstream 378917 13497518 ~ 13497884 (+) True G945052
TU1079029 lncRNA downstream 48452 13931687 ~ 13931898 (+) True G946278
TU1079031 lncRNA downstream 51817 13935052 ~ 13935276 (+) True G946280
TU1079055 lncRNA downstream 69239 13952474 ~ 13952696 (+) True G946304
TU1079109 lncRNA downstream 110084 13993319 ~ 13993572 (+) True G946357
TU1079123 lncRNA downstream 118608 14001843 ~ 14002162 (+) True G946371
XM_021620204.2 mRNA upstream 28075 13823984 ~ 13848726 (+) True mcur1
XM_036934924.1 mRNA upstream 62352 13446684 ~ 13814449 (+) False dpp6a
XM_036934926.1 mRNA upstream 62352 13498253 ~ 13814449 (+) False dpp6a
XM_036934925.1 mRNA upstream 62352 13645289 ~ 13814449 (+) True dpp6a
XR_005034812.1 mRNA upstream 160018 13716727 ~ 13716783 (+) True LOC118937473
XM_021620216.2 mRNA downstream 238165 14121400 ~ 14207555 (+) True LOC110535303
XM_036934930.1 mRNA downstream 271549 14154784 ~ 14176781 (+) False LOC110535304
XR_005034573.1 mRNA downstream 271549 14154784 ~ 14176930 (+) False LOC110535304
XR_005034566.1 mRNA downstream 271549 14154784 ~ 14202957 (+) False LOC110535304
XR_005034567.1 mRNA downstream 271549 14154784 ~ 14202957 (+) False LOC110535304
TU1077607 other upstream 481926 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 2765465 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 3631295 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 5021364 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 5224280 8651504 ~ 8652521 (+) False G940376
TU1079178 other downstream 181313 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 272119 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 288307 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 427340 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 434773 14318008 ~ 14318623 (+) True G946643

Expression Profile