RNA id: XR_005034571.1


Basic Information

Item Value
RNA id XR_005034571.1
length 3550
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110535304
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14154784 ~ 14202999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaaaaataatttttaacctgtcttctccccttcatttatactgattgaagtggatttaaaaggtgacatcaataaggatcatagctttcacctggagtcACCTGACCAGTCTGTCTTGGAAAGAGCAGGTTTgcttaatgttttgaacactcagtgttTGCTCCTCTTTTTCCTATCTTCTCTTATCGGCTCCTATTGTCTCCTATCGACTCTTATATTCTCTTAATGACTCCTATCAACTCTTATATTCTCTTAATGACTCCTATCGACTCCTATATTCTCTTTACGACTCCTATCGACTCTTATATTCTCTTAATGACTCCTATCGACTCTTATATTCTCTTAATGACTCCTATCGACTCTTATATTCTCTTAATGACTCCTATCGACTCTTATCTTCTCTTAATGACTCCTATCGACTCCTACATTCTCTTAACAACTCCTAATCTCTCTTCTGTATTGCAGACTCCATTGAAATAAAACACTAACAGAATGTCTGTTTACCTTtttcataatgacacacactacagtatacacacacatacagtacactcacACACTACAGTACTGGTAAGTGCACGAGGGGCCTTTATACGGCCTGTATCAGTTTATGTAGATGACGCAAAACATGTAAGCGGTGCGAGTGAACATCCTTGTCCAATCCCTCCAATCAAGAGTGTGCTGAGACCAAATGTGTTGCTAAACGAATTCAACACTTCTATCAGGTGAGAAATCTCAAGTGCTTCAGTTACCTcaggtgcatctcaatagtataATGTGGCTTCCTCTTCGTCTCGTCTCCATCAGCTACATAAGATAGAGTGGGTGAATGCACATGGTGGAATCCTACCAGGGAGTTACTTTCTGCTGTTTATGTGTTTTCTCATCAGTgcaaaggaaaggagaggacacTGCTTTAAACTGATGATATGCACCGCTGGTCTTGGGTCGCTAGCGTACCTGTAGAcgtccagtcattgcactaacgctagttagcattggcccGCGAAActgcctctaacttccttcatactgcaaGCAGACATAAAAACGCAGAGACACAAAATGAATTGCCAGAATGGTGTAGTATCCCTTTAAATACAACACACTCTTAACCTTCCCCATACTGTATGTGCTCTCACTTATCCTGTGTGATCTGATTTAAGTGCACACAGGTCCTTCTGGGGAAAGAGAGTGTTACGGACGCCGTCGTCCCAGAGGCACATTGACCCACTGCTGAACCAGTTCAAGTACAAAGGTGAGAAAGTCTCCTCTGGTTCGGCTTACTCTCAACTCCCTGAGacgatggagacagagacagagagagctcaaGCGCTCACAGAGACGCAGAGCAAGTACAAAGAGAGCGGGAAGAAAAATATCTCCCATCCGGTCTAGCTGATACCATGGATACCCAATCTGTCAGAAATGTGTCTGAACTGCAAAGTCAGGTGAAAAGAGCAGCAGACGAAGTACAAGAAGGCAGTGAAGAAGAAGGCAAGGTCTCTTTACTCTGTGATATGAAAGACTCTGGAGACCCAACATGCCAAGCGGTCTCCCAGCTCCAGAGCCAGGCCAAGTACAAGGAGGCAGGGAAGCAGCAGTtctccactcttctctactcAAAGCTTCCAGAGACTTTGGAGACTCAGCACGCCAAAGATGCCTCCCAGCTACAGAgcgtgccattaccacgagcccgtcttccccaattaaggtgccaccaacctgtgCACTCTATACCACCTTACCCAGCACGCCAAAGAGGCTTCTCTCACTGAAATACAAGCAAGGTGGCTAAAAGGATACCTCCAGTTCTCTGTACTCCCTGCTTCAAGAAACGACAGAGATCCAGATAGACAAAGAGCACTGGGATATTTACAGTGAGGTGGCCTATAGGAGAAAAACGAAGCATTACATCTACAATGATGTCCTGGGAAGGTTTGATATCGAGCATGCTAATGTGGAATCCAAACTCACTAGCCAGgtGAAGTCTAAGACCAATCAGAACCAGGTGATTGAGGCATCCATGGACCTGCCCAACCTTCTGCACCTGGAGTACGCGCTACACGCTACCAAGCTGCAGAGCAACGTAAAGTACAAGAAGAAGTACGAGCGGTCTAACGGACACTACTATATAGCACTGGACACAACAGAACAGCAAGAGAATGCGATACTACACAGCCAGgaagtgatgtcactgagtattgcccctatatataggaccttccaccacctgggatatggatgcctgaTGACGACCTAGACGTTGAAATGTTGTTGtaaataaatatcacctgggagaATGAGCAACAGTGTGCAgtgttttcctttctgttttccatgAGTTTGCCTACAACTCCAGCACCTGCGGAAAGTACCAGGATGTGAGTATGTTCTTCAGCTTTGGCACACAgtaacaaaacgttttgcaacagggAACAAAAACAAGTATTTCTGTCATGATCCTTTTGATATCTTGTTGTTGCCAAGCTGACCTGAGTCTGTCAGTGTACGTGTTAGTCTGTGTTTGACTCTTCCAGGCCTCCTGCAGGCAGACAGCCCTGCTGAGGGAGAACTCGTATTGAACAGTGTCCGAGACACATCAGAACTACTGTACGCCGCCTACCTGAAAGCTGTCTACAGTCAGTTAGGGATAACTCTCAGTACAGCATCCCACCACGCATTGCACTTTATTTTACACCACAGAATGGGATATGTGCTTGGATGGTGTGTCAATCTCCCTCAACATTATGCAGAAGAAGTACAAGGATGAGGCGGAGAAACTGAAGGGTTCGTATGTGTTCAACACCCCTGAGATTGAGAGAGTGAAGAACAACCAGAGAAACATCAGCTCAGTGAGggacacagtacacacacacacacacacacacacacttttatgcAGTATTATCTGTCAACACAGTTACCCTTTTGCTCTACCCCTCCAGTGTCAGTACACTTGGGACTCAAAGCTGCTGAAAAGCCTGATGTCTTCTGTCACCGACACTCCGGAAATCATCTTCGCCAGGGAGAACAAAGGAAATCAGTGACGTGAAATACAGAGACGGGGTGGGGAGCGGGATGGTAGTCATGGAAACTGTTGACATGGAGAGGGTCCGCAGAAACCAGGAGAACATCAGCTTGGTGAAGCATAAAAAGCAGCTCCAGGCCCCCAGTGTGGGAGTCACCCCAGAGTTGGAGAGAGTCCGTCAGAACCAGGAGAACATCAGCTCAGCAAGTCACAcaggctgcatctgaaatggcaaccTACAGTATATGTGAAGTACCAGCGCGGGCTGAAGGAGATGAAGGGGCGGTACTGCGGCGAGTTGGACACGCCCGGACTGAGTAGTGTCAGGGAGTCACAGAACGACATCTAACACAACTGAAGCGCACCGCATGTGGGACTGCTGCACTTTTAACCCACACAGCTAAAGAGTTAACAGCATGGCTGTGTCCTTGTTATGAGGGAGCCATAAtgaatgtactgtactgtgtctgtgagcgtgtctgtgtgtgcgttaCTAATAAAGTGATTTTTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079303 lncRNA upstream 40217 14114083 ~ 14114567 (+) True G946549
TU1079299 lncRNA upstream 42271 14112293 ~ 14112513 (+) True G946545
TU1079142 lncRNA upstream 135024 14019324 ~ 14019760 (+) True G946390
TU1079129 lncRNA upstream 147467 14006606 ~ 14007317 (+) True G946377
TU1079126 lncRNA upstream 151307 14003180 ~ 14003477 (+) True G946374
TU1079371 lncRNA downstream 36879 14239836 ~ 14240314 (+) True G946616
TU1079390 lncRNA downstream 74082 14277039 ~ 14278140 (+) True G946635
TU1079423 lncRNA downstream 98013 14300970 ~ 14301208 (+) True G946663
TU1079424 lncRNA downstream 98710 14301667 ~ 14301920 (+) True G946664
TU1079406 lncRNA downstream 104744 14307701 ~ 14309785 (+) True G946646
XM_021620210.2 mRNA upstream 271549 13876801 ~ 13883235 (+) False LOC110535301
XM_036936641.1 mRNA downstream 6193 14209150 ~ 14210346 (+) True LOC118937467
XM_021620218.2 mRNA downstream 9458 14212415 ~ 14220500 (+) False ssr1
XM_021620219.2 mRNA downstream 9462 14212419 ~ 14220500 (+) True ssr1
XR_005034574.1 mRNA downstream 115785 14318742 ~ 14321570 (+) True LOC118936448
LOC110536553 mRNA downstream 118835 14321792 ~ 14329490 (+) True LOC110536553
TU1079178 other upstream 88915 14064548 ~ 14065869 (+) True G946426
TU1077607 other upstream 759909 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 3043448 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 3909278 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 5299347 8852494 ~ 8855437 (+) True LOC118937463
TU1079404 other downstream 107618 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 115051 14318008 ~ 14318623 (+) True G946643
TU1079402 other downstream 115708 14318665 ~ 14329336 (+) True G946642
TU1079453 other downstream 196905 14399862 ~ 14400273 (+) True G946690
TU1079455 other downstream 198297 14401254 ~ 14401644 (+) True G946692

Expression Profile