RNA id: XM_021620219.2


Basic Information

Item Value
RNA id XM_021620219.2
length 2421
RNA type mRNA
GC content 0.44
exon number 8
gene id ssr1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14212415 ~ 14220500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgGAATATTTTTGGGGGGTGAGTGTAGTGTTAGATGATAGggtatttgtttgtttatttattttttaaataaaagtgtTAGGGAGTTGTACTCGAGTCTAGTAGGTGGCAGTAATGCAACGTTTATTGGATGACAACCGCCGTTAAACCTAATCGAAGAAGAAGTAGCAGCTAGGCTTCAGGGAATCACTACGTTTCATAGTGAAGGAGGCTTACTGATTTCACATCAAAATGATGACATTTCTACCTAAACTGCTTTTGCTAGTATTACTAGCTTTCCCGGCAACGATTATCATGAAAGGGCCATTAGTGGCAGCCCAGGATGCTACTGAGGACGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGACGTGAACGCAGAGGATGAGGATGACGAGGCCGAAGTTGAAGATGATGAAAATACGGAATTGACAGaagaaaaagaggaagaggaggaggaagccgTAGGAGGAGATGTGAAAGCCTCCCCCAATGCTGACACCACCATCCTCTTCGtcaagggagatgACTTCCCAGCTAATGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAAGGCAGCGACAACTTTGTGGTGGAGTCGCTGGACGCATCCTTCCGCTACCCGCAGGACTTCCAGTTTTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCTGCCGGGCGCCAGGCCACATTTGAGTACTCTTTCATCCCTGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTTATCAACCTCAACTACAAGGACAGCAACGGTAACTTGTTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCGAGAGAGAGGACGGACTGGATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTTTGGGTCTGCTGGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGCGGCCAGCTGCCAAGGTGGAGATGGGCACTTCTAGCCACAACGATGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAACCAGATCAACAAGGCTTCCCCCAGACGATCTCCCCGCAAGCGGACACAGAAGCGCTCTGCTGGTTCGGACGAGTGATGGGCCCCCACCGCCCAGTTCTGCCAGTCGCGCCTGACGCAGCCATAGCGCCAACCTTGTCAGCCGGGGAGAGGCAACAGCCTTCTCTCACCACAAAATCTCTTCACAAGAGGCCGGTTTCTACCGCTAAACTAGACAATAAATACCAAACGGacccattttttattttattttgttgagGCGTTATCACAGGTATTGTGATGAAGAAATGGTTTTGAGTAAGTTTTTGTGAAGATTAAAGTCCTGAAAGATGGAGGGGATATTAGAGCTAGATAAATGATAGTGGGGGATGATACACTGTTTTTTTCTTTTAGGTAATTTTTCGGTTGTGACTGTCTTTCATTTTTTTACCTGTGGATATCTTTTTGAGGCAGAATAGTTTGTTTTTGGTATCCCTGAGAGCCATGATTACACACACCttgtctgtaaaaaaatatatatatataatgttttgCACTGGTTAATATCTACACATTTGTGTTTCTGTCACATTGTTCTCTGCTGCTTCGTGGCACAGAGGATGGCCGGCTTCGAATCTTGTCATTTGAAGTGCACTGCAATGTTCGGCCATCTTTCACGGCTTCTATGATTCGGTGAAGACATGAGGACATGGTAAACGGTCTTCTTTTGTCTTCAATGTGcctgtaaaacttttttttttaaacaaacatgTTTTGTGTCATTTACTGTAAATTTGCATTCTTTATATTCCAAGGCTTGATTTATTTCATCTACACCTATGAATTaagtatttaattttttttatctgaGGATCTGAATAcagcactggtgtgtgtgtgtgtgtgtgtatactgatgAGTGCCCTGCAATGCTAATTTAGTTTCTTGACTTGTCTGGGATAATTACTTGTGTGTTTTACAGGCACAGTACATTTACTACTGTACCACAAGGCCCCCCCCATTTCATAAACTTCTGAGAGGGGCTTTGGACTAACTGTTTGGCACTGACTgtcaaattttaaaaaacaaatgtttgCTAGTAAATCTTccactcccccccctccccccaaccaTCTTTCTGTTGTGTGATTCATGGAGCTTTTTAATGACCATTTGAGAATAGATGGATCCcaaataatccccccccccccccccctgtatatgAACTTGTAATGAAAACATATTgtagcaacaaacaaaaaaaacatttttacggCGCAGTATGAATGTGTTCATTTTGGACACTGGTGCAGCTTCATGTAGAAAACAGAAAATTAAAGTGGAGATGTATGTGCTATGtctttatttactgcagtgtgaACTAATACATATTTTGTCTTCACTCTT

Function

GO: NA

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079303 lncRNA upstream 97852 14114083 ~ 14114567 (+) True G946549
TU1079299 lncRNA upstream 99906 14112293 ~ 14112513 (+) True G946545
TU1079142 lncRNA upstream 192659 14019324 ~ 14019760 (+) True G946390
TU1079129 lncRNA upstream 205102 14006606 ~ 14007317 (+) True G946377
TU1079126 lncRNA upstream 208942 14003180 ~ 14003477 (+) True G946374
TU1079371 lncRNA downstream 19336 14239836 ~ 14240314 (+) True G946616
TU1079390 lncRNA downstream 56539 14277039 ~ 14278140 (+) True G946635
TU1079423 lncRNA downstream 80470 14300970 ~ 14301208 (+) True G946663
TU1079424 lncRNA downstream 81167 14301667 ~ 14301920 (+) True G946664
TU1079406 lncRNA downstream 87201 14307701 ~ 14309785 (+) True G946646
XM_036936641.1 mRNA upstream 2073 14209150 ~ 14210346 (+) True LOC118937467
XR_005034569.1 mRNA upstream 9462 14154784 ~ 14202957 (+) False LOC110535304
XR_005034574.1 mRNA downstream 98242 14318742 ~ 14321570 (+) True LOC118936448
LOC110536553 mRNA downstream 101292 14321792 ~ 14329490 (+) True LOC110536553
XM_036934937.1 mRNA downstream 119637 14340137 ~ 14361493 (+) False oplah
XM_036934935.1 mRNA downstream 119638 14340138 ~ 14361493 (+) False oplah
XM_036934938.1 mRNA downstream 119638 14340138 ~ 14361493 (+) True oplah
TU1079302 other upstream 9420 14171542 ~ 14202999 (+) True LOC110535304
TU1079304 other upstream 41542 14155354 ~ 14170877 (+) False LOC110535304
TU1079178 other upstream 146550 14064548 ~ 14065869 (+) True G946426
TU1077607 other upstream 817544 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 3101083 11110726 ~ 11111336 (+) True G942702
TU1079404 other downstream 90075 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 97508 14318008 ~ 14318623 (+) True G946643
TU1079402 other downstream 98165 14318665 ~ 14329336 (+) True G946642
TU1079453 other downstream 179362 14399862 ~ 14400273 (+) True G946690
TU1079455 other downstream 180754 14401254 ~ 14401644 (+) True G946692

Expression Profile